Search of human proteins with 193788637

Search of human proteins with 193788637

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|193788637 cysteine/histidine-rich 1 isoform 2 [Homo sapiens]
         (192 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|193788637 cysteine/histidine-rich 1 isoform 2 [Homo sapiens]       384   e-107
gi|14249268 cysteine/histidine-rich 1 isoform 2 [Homo sapiens]        384   e-107
gi|193788634 cysteine/histidine-rich 1 isoform 1 [Homo sapiens]       167   4e-42
gi|25014088 solute carrier family 34 (sodium phosphate), member ...    30   1.3  
gi|110825988 TAR RNA binding protein 1 [Homo sapiens]                  29   2.2  
gi|14916437 prostein [Homo sapiens]                                    28   4.8  
gi|157266317 ataxia telangiectasia and Rad3 related protein [Hom...    28   6.3  
gi|169218238 PREDICTED: similar to ataxia telangiectasia and Rad...    28   6.3  

>gi|193788637 cysteine/histidine-rich 1 isoform 2 [Homo sapiens]
          Length = 192

 Score =  384 bits (986), Expect = e-107
 Identities = 192/192 (100%), Positives = 192/192 (100%)

Query: 1   MAPKPGAEWSTALSHLVLGVVSLHAAVSTAEASRGAAAGFLLQVLAATTTLAPGLSTHED 60
           MAPKPGAEWSTALSHLVLGVVSLHAAVSTAEASRGAAAGFLLQVLAATTTLAPGLSTHED
Sbjct: 1   MAPKPGAEWSTALSHLVLGVVSLHAAVSTAEASRGAAAGFLLQVLAATTTLAPGLSTHED 60

Query: 61  CLAGAWVATVIGLPLLAFDFHWVNGDRSSANLLLGGGMVLAVAGGHLGPEGRSVAGQAML 120
           CLAGAWVATVIGLPLLAFDFHWVNGDRSSANLLLGGGMVLAVAGGHLGPEGRSVAGQAML
Sbjct: 61  CLAGAWVATVIGLPLLAFDFHWVNGDRSSANLLLGGGMVLAVAGGHLGPEGRSVAGQAML 120

Query: 121 LVVAVTILIVAVFTANTYGMWGGAMLGVAGLLSRLEEDRLLLLPKEDVCRWALAVGSWAY 180
           LVVAVTILIVAVFTANTYGMWGGAMLGVAGLLSRLEEDRLLLLPKEDVCRWALAVGSWAY
Sbjct: 121 LVVAVTILIVAVFTANTYGMWGGAMLGVAGLLSRLEEDRLLLLPKEDVCRWALAVGSWAY 180

Query: 181 CRALHTQRLQWE 192
           CRALHTQRLQWE
Sbjct: 181 CRALHTQRLQWE 192


>gi|14249268 cysteine/histidine-rich 1 isoform 2 [Homo sapiens]
          Length = 192

 Score =  384 bits (986), Expect = e-107
 Identities = 192/192 (100%), Positives = 192/192 (100%)

Query: 1   MAPKPGAEWSTALSHLVLGVVSLHAAVSTAEASRGAAAGFLLQVLAATTTLAPGLSTHED 60
           MAPKPGAEWSTALSHLVLGVVSLHAAVSTAEASRGAAAGFLLQVLAATTTLAPGLSTHED
Sbjct: 1   MAPKPGAEWSTALSHLVLGVVSLHAAVSTAEASRGAAAGFLLQVLAATTTLAPGLSTHED 60

Query: 61  CLAGAWVATVIGLPLLAFDFHWVNGDRSSANLLLGGGMVLAVAGGHLGPEGRSVAGQAML 120
           CLAGAWVATVIGLPLLAFDFHWVNGDRSSANLLLGGGMVLAVAGGHLGPEGRSVAGQAML
Sbjct: 61  CLAGAWVATVIGLPLLAFDFHWVNGDRSSANLLLGGGMVLAVAGGHLGPEGRSVAGQAML 120

Query: 121 LVVAVTILIVAVFTANTYGMWGGAMLGVAGLLSRLEEDRLLLLPKEDVCRWALAVGSWAY 180
           LVVAVTILIVAVFTANTYGMWGGAMLGVAGLLSRLEEDRLLLLPKEDVCRWALAVGSWAY
Sbjct: 121 LVVAVTILIVAVFTANTYGMWGGAMLGVAGLLSRLEEDRLLLLPKEDVCRWALAVGSWAY 180

Query: 181 CRALHTQRLQWE 192
           CRALHTQRLQWE
Sbjct: 181 CRALHTQRLQWE 192


>gi|193788634 cysteine/histidine-rich 1 isoform 1 [Homo sapiens]
          Length = 362

 Score =  167 bits (424), Expect = 4e-42
 Identities = 87/110 (79%), Positives = 93/110 (84%), Gaps = 4/110 (3%)

Query: 1   MAPKPGAEWSTALSHLVLGVVSLHAAVSTAEASRGAAAGFLLQVLAATTTLAPGLSTHED 60
           MAPKPGAEWSTALSHLVLGVVSLHAAVSTAEASRGAAAGFLLQVLAATTTLAPGLSTHED
Sbjct: 1   MAPKPGAEWSTALSHLVLGVVSLHAAVSTAEASRGAAAGFLLQVLAATTTLAPGLSTHED 60

Query: 61  CLAGAWVATVIGLPLLAFDFHWVNGDRSSANLLLGGGMVLAVAGGHLGPE 110
           CLAGAWVATVIGLPLLAFDFHW     ++ +L+  G  +  +A   L  E
Sbjct: 61  CLAGAWVATVIGLPLLAFDFHWC----TNGHLMCAGCFIHLLADARLKEE 106


>gi|25014088 solute carrier family 34 (sodium phosphate), member 3
           [Homo sapiens]
          Length = 599

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 34/99 (34%), Positives = 40/99 (40%), Gaps = 28/99 (28%)

Query: 38  AGFLLQVLAATTTLAPGLSTHEDCLAGA--WVATV------IGLPLLAFDFHWVNGDRSS 89
           AG LL  L     L   L+ H   +     WVA V      + LPL AF           
Sbjct: 456 AGILLWYLVPALRLPIPLARHFGVVTARYRWVAGVYLLLGFLLLPLAAF----------- 504

Query: 90  ANLLLGGGMVLAVAGGHLGPEGRSVAGQAMLLVVAVTIL 128
             L L GGMVLA  GG L           +LLV+ VT+L
Sbjct: 505 -GLSLAGGMVLAAVGGPL--------VGLVLLVILVTVL 534


>gi|110825988 TAR RNA binding protein 1 [Homo sapiens]
          Length = 1621

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 21/69 (30%), Positives = 31/69 (44%)

Query: 95  GGGMVLAVAGGHLGPEGRSVAGQAMLLVVAVTILIVAVFTANTYGMWGGAMLGVAGLLSR 154
           G  + LA+ GG  G E       A L+   +  ++V    A    +WGG     A L S 
Sbjct: 165 GTAVALALGGGGDGDEAGPAEDAAALVAGRLLPVLVQCGGAALRAVWGGLAAPGASLGSG 224

Query: 155 LEEDRLLLL 163
             E++LL+L
Sbjct: 225 RVEEKLLVL 233


>gi|14916437 prostein [Homo sapiens]
          Length = 553

 Score = 28.1 bits (61), Expect = 4.8
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 33  SRGAAAGFLLQVLA-ATTTLAPGLSTHEDCLAGAWVATVIGLPLLA 77
           S G   G+LL  +   T+ LAP L T E+CL G  + T+I L  +A
Sbjct: 169 SLGGCLGYLLPAIDWDTSALAPYLGTQEECLFG--LLTLIFLTCVA 212


>gi|157266317 ataxia telangiectasia and Rad3 related protein [Homo
            sapiens]
          Length = 2644

 Score = 27.7 bits (60), Expect = 6.3
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 82   WVNGDRSSANLLLGGGMVLAVAGGHLGPEGRS--VAGQAMLLV 122
            W  GD   A ++L  G+ L        PEG++  + G+AMLLV
Sbjct: 1964 WSKGDVHQALIVLQKGVELCFPENETPPEGKNMLIHGRAMLLV 2006


>gi|169218238 PREDICTED: similar to ataxia telangiectasia and Rad3
            related protein, partial [Homo sapiens]
          Length = 2105

 Score = 27.7 bits (60), Expect = 6.3
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 82   WVNGDRSSANLLLGGGMVLAVAGGHLGPEGRS--VAGQAMLLV 122
            W  GD   A ++L  G+ L        PEG++  + G+AMLLV
Sbjct: 1722 WSKGDVHQALIVLQKGVELCFPENETPPEGKNMLIHGRAMLLV 1764


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,248,657
Number of Sequences: 37866
Number of extensions: 270677
Number of successful extensions: 605
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 599
Number of HSP's gapped (non-prelim): 10
length of query: 192
length of database: 18,247,518
effective HSP length: 97
effective length of query: 95
effective length of database: 14,574,516
effective search space: 1384579020
effective search space used: 1384579020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.