Search of human proteins with 190886449

Search of human proteins with 190886449

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|190886449 thymic stromal lymphopoietin isoform 2 [Homo
sapiens]
         (63 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|190886449 thymic stromal lymphopoietin isoform 2 [Homo sapiens]    131   1e-31
gi|14719428 thymic stromal lymphopoietin isoform 1 [Homo sapiens]     131   1e-31
gi|21361912 DnaJ (Hsp40) homolog, subfamily C, member 1 [Homo sa...    27   2.7  
gi|22749539 hypothetical protein LOC257169 [Homo sapiens]              27   4.6  
gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens]               26   7.8  

>gi|190886449 thymic stromal lymphopoietin isoform 2 [Homo
          sapiens]
          Length = 63

 Score =  131 bits (330), Expect = 1e-31
 Identities = 63/63 (100%), Positives = 63/63 (100%)

Query: 1  MFAMKTKAALAIWCPGYSETQINATQAMKKRRKRKVTTNKCLEQVSQLQGLWRRFNRPLL 60
          MFAMKTKAALAIWCPGYSETQINATQAMKKRRKRKVTTNKCLEQVSQLQGLWRRFNRPLL
Sbjct: 1  MFAMKTKAALAIWCPGYSETQINATQAMKKRRKRKVTTNKCLEQVSQLQGLWRRFNRPLL 60

Query: 61 KQQ 63
          KQQ
Sbjct: 61 KQQ 63


>gi|14719428 thymic stromal lymphopoietin isoform 1 [Homo sapiens]
          Length = 159

 Score =  131 bits (330), Expect = 1e-31
 Identities = 63/63 (100%), Positives = 63/63 (100%)

Query: 1   MFAMKTKAALAIWCPGYSETQINATQAMKKRRKRKVTTNKCLEQVSQLQGLWRRFNRPLL 60
           MFAMKTKAALAIWCPGYSETQINATQAMKKRRKRKVTTNKCLEQVSQLQGLWRRFNRPLL
Sbjct: 97  MFAMKTKAALAIWCPGYSETQINATQAMKKRRKRKVTTNKCLEQVSQLQGLWRRFNRPLL 156

Query: 61  KQQ 63
           KQQ
Sbjct: 157 KQQ 159


>gi|21361912 DnaJ (Hsp40) homolog, subfamily C, member 1 [Homo
           sapiens]
          Length = 554

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 1   MFAMKTKAALAIWCPGYSETQINATQAMKKRRKRKVTTNKCLEQVSQLQGLWRRFNRPLL 60
           +F + T    A+    Y E Q++   + KKR K+K T +K ++ VS+L G   +  R L+
Sbjct: 158 LFIILTVGHYAVVWSIYLEKQLDELLSRKKREKKKKTGSKSVD-VSKL-GASEKNERLLM 215

Query: 61  KQQ 63
           K Q
Sbjct: 216 KPQ 218


>gi|22749539 hypothetical protein LOC257169 [Homo sapiens]
          Length = 461

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 10  LAIWCPGYSETQINATQAMKKRRKRKVTTNKCLEQVSQLQGLWRRFNRP 58
           + +W P   ET+I+ +Q  KK+RK     +K    +S  Q    R   P
Sbjct: 136 VVLWIP--EETEIHVSQHGKKKRKNSAVKSKSFLGLSGNQSAGTRVGTP 182


>gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens]
          Length = 1910

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 15  PGYSETQINATQAMKKRRKRKVTTNKCLEQVSQ 47
           P   E Q   T++ KKRRK  +  +K + +VSQ
Sbjct: 839 PESDELQELRTRSAKKRRKNALIRHKSIAEVSQ 871


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.128    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,026,171
Number of Sequences: 37866
Number of extensions: 52113
Number of successful extensions: 272
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 269
Number of HSP's gapped (non-prelim): 5
length of query: 63
length of database: 18,247,518
effective HSP length: 36
effective length of query: 27
effective length of database: 16,884,342
effective search space: 455877234
effective search space used: 455877234
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.