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Search of human proteins with 190684699
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|190684699 nudix (nucleoside diphosphate linked moiety
X)-type motif 22 isoform b [Homo sapiens]
(270 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|190684699 nudix (nucleoside diphosphate linked moiety X)-type... 548 e-156
gi|190883480 nudix (nucleoside diphosphate linked moiety X)-type... 531 e-151
gi|14150137 nudix (nucleoside diphosphate linked moiety X)-type ... 531 e-151
gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens] 33 0.34
gi|62543567 nudix (nucleoside diphosphate linked moiety X)-type ... 32 0.45
gi|155722983 TNF receptor-associated protein 1 [Homo sapiens] 31 1.00
gi|126131104 fibrocystin isoform 2 [Homo sapiens] 29 4.9
gi|126131102 fibrocystin isoform 1 [Homo sapiens] 29 4.9
>gi|190684699 nudix (nucleoside diphosphate linked moiety X)-type
motif 22 isoform b [Homo sapiens]
Length = 270
Score = 548 bits (1413), Expect = e-156
Identities = 270/270 (100%), Positives = 270/270 (100%)
Query: 1 MDPEVTLLLQCPGGGLPQEQIQAELSPAHDRRPLPGGDEAITAIWETRLKAQPWLFDAPK 60
MDPEVTLLLQCPGGGLPQEQIQAELSPAHDRRPLPGGDEAITAIWETRLKAQPWLFDAPK
Sbjct: 1 MDPEVTLLLQCPGGGLPQEQIQAELSPAHDRRPLPGGDEAITAIWETRLKAQPWLFDAPK 60
Query: 61 FRLHSATLAPIGSRGPQLLLRLGLTSYRDFLGTNWSSSAAWLRQQGATDWGDTQAYLADP 120
FRLHSATLAPIGSRGPQLLLRLGLTSYRDFLGTNWSSSAAWLRQQGATDWGDTQAYLADP
Sbjct: 61 FRLHSATLAPIGSRGPQLLLRLGLTSYRDFLGTNWSSSAAWLRQQGATDWGDTQAYLADP 120
Query: 121 LGVGAALATADDFLVFLRRSRQVAEAPGLVDVPGGHPEPQVNLPLLTLSQPLLLGIARNE 180
LGVGAALATADDFLVFLRRSRQVAEAPGLVDVPGGHPEPQVNLPLLTLSQPLLLGIARNE
Sbjct: 121 LGVGAALATADDFLVFLRRSRQVAEAPGLVDVPGGHPEPQVNLPLLTLSQPLLLGIARNE 180
Query: 181 TSAGRASAEFYVQCSLTSEQVRKHYLSGGPEAHESTGIFFVETQNVRRLPETEMWAELCP 240
TSAGRASAEFYVQCSLTSEQVRKHYLSGGPEAHESTGIFFVETQNVRRLPETEMWAELCP
Sbjct: 181 TSAGRASAEFYVQCSLTSEQVRKHYLSGGPEAHESTGIFFVETQNVRRLPETEMWAELCP 240
Query: 241 SAKGAIILYNRVQGSPTGAALGSPALLPPL 270
SAKGAIILYNRVQGSPTGAALGSPALLPPL
Sbjct: 241 SAKGAIILYNRVQGSPTGAALGSPALLPPL 270
>gi|190883480 nudix (nucleoside diphosphate linked moiety X)-type
motif 22 isoform a [Homo sapiens]
Length = 303
Score = 531 bits (1369), Expect = e-151
Identities = 270/303 (89%), Positives = 270/303 (89%), Gaps = 33/303 (10%)
Query: 1 MDPEVTLLLQCPGGGLPQEQIQAELSPAHDRRPLPGGDEAITAIWETRLKAQPWLFDAPK 60
MDPEVTLLLQCPGGGLPQEQIQAELSPAHDRRPLPGGDEAITAIWETRLKAQPWLFDAPK
Sbjct: 1 MDPEVTLLLQCPGGGLPQEQIQAELSPAHDRRPLPGGDEAITAIWETRLKAQPWLFDAPK 60
Query: 61 FRLHSATLAPIGSRGPQLLLRLGLTSYRDFLGTNWSSSAAWLRQQGATDWGDTQAYLADP 120
FRLHSATLAPIGSRGPQLLLRLGLTSYRDFLGTNWSSSAAWLRQQGATDWGDTQAYLADP
Sbjct: 61 FRLHSATLAPIGSRGPQLLLRLGLTSYRDFLGTNWSSSAAWLRQQGATDWGDTQAYLADP 120
Query: 121 LGVGAALATADDFLVFLRRSRQVAEAPGLVDVPGGHPEPQ-------------------- 160
LGVGAALATADDFLVFLRRSRQVAEAPGLVDVPGGHPEPQ
Sbjct: 121 LGVGAALATADDFLVFLRRSRQVAEAPGLVDVPGGHPEPQALCPGGSPQHQDLAGQLVVH 180
Query: 161 -------------VNLPLLTLSQPLLLGIARNETSAGRASAEFYVQCSLTSEQVRKHYLS 207
VNLPLLTLSQPLLLGIARNETSAGRASAEFYVQCSLTSEQVRKHYLS
Sbjct: 181 ELFSSVLQEICDEVNLPLLTLSQPLLLGIARNETSAGRASAEFYVQCSLTSEQVRKHYLS 240
Query: 208 GGPEAHESTGIFFVETQNVRRLPETEMWAELCPSAKGAIILYNRVQGSPTGAALGSPALL 267
GGPEAHESTGIFFVETQNVRRLPETEMWAELCPSAKGAIILYNRVQGSPTGAALGSPALL
Sbjct: 241 GGPEAHESTGIFFVETQNVRRLPETEMWAELCPSAKGAIILYNRVQGSPTGAALGSPALL 300
Query: 268 PPL 270
PPL
Sbjct: 301 PPL 303
>gi|14150137 nudix (nucleoside diphosphate linked moiety X)-type
motif 22 isoform a [Homo sapiens]
Length = 303
Score = 531 bits (1369), Expect = e-151
Identities = 270/303 (89%), Positives = 270/303 (89%), Gaps = 33/303 (10%)
Query: 1 MDPEVTLLLQCPGGGLPQEQIQAELSPAHDRRPLPGGDEAITAIWETRLKAQPWLFDAPK 60
MDPEVTLLLQCPGGGLPQEQIQAELSPAHDRRPLPGGDEAITAIWETRLKAQPWLFDAPK
Sbjct: 1 MDPEVTLLLQCPGGGLPQEQIQAELSPAHDRRPLPGGDEAITAIWETRLKAQPWLFDAPK 60
Query: 61 FRLHSATLAPIGSRGPQLLLRLGLTSYRDFLGTNWSSSAAWLRQQGATDWGDTQAYLADP 120
FRLHSATLAPIGSRGPQLLLRLGLTSYRDFLGTNWSSSAAWLRQQGATDWGDTQAYLADP
Sbjct: 61 FRLHSATLAPIGSRGPQLLLRLGLTSYRDFLGTNWSSSAAWLRQQGATDWGDTQAYLADP 120
Query: 121 LGVGAALATADDFLVFLRRSRQVAEAPGLVDVPGGHPEPQ-------------------- 160
LGVGAALATADDFLVFLRRSRQVAEAPGLVDVPGGHPEPQ
Sbjct: 121 LGVGAALATADDFLVFLRRSRQVAEAPGLVDVPGGHPEPQALCPGGSPQHQDLAGQLVVH 180
Query: 161 -------------VNLPLLTLSQPLLLGIARNETSAGRASAEFYVQCSLTSEQVRKHYLS 207
VNLPLLTLSQPLLLGIARNETSAGRASAEFYVQCSLTSEQVRKHYLS
Sbjct: 181 ELFSSVLQEICDEVNLPLLTLSQPLLLGIARNETSAGRASAEFYVQCSLTSEQVRKHYLS 240
Query: 208 GGPEAHESTGIFFVETQNVRRLPETEMWAELCPSAKGAIILYNRVQGSPTGAALGSPALL 267
GGPEAHESTGIFFVETQNVRRLPETEMWAELCPSAKGAIILYNRVQGSPTGAALGSPALL
Sbjct: 241 GGPEAHESTGIFFVETQNVRRLPETEMWAELCPSAKGAIILYNRVQGSPTGAALGSPALL 300
Query: 268 PPL 270
PPL
Sbjct: 301 PPL 303
>gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]
Length = 1603
Score = 32.7 bits (73), Expect = 0.34
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 117 LADPLGV-GAALATADDFLVFLRRSRQVAEA----PGLVDVPGGHPEPQVNLPLLTLSQP 171
LADPLG+ G AL D L +A P L+DVPG EPQ L L++P
Sbjct: 303 LADPLGLPGLALQALDTLPDSLESQLLDPQALDPLPKLLDVPGRRLEPQQPLGHCPLAEP 362
Query: 172 LLLGI 176
L L +
Sbjct: 363 LRLDL 367
>gi|62543567 nudix (nucleoside diphosphate linked moiety X)-type
motif 17 [Homo sapiens]
Length = 328
Score = 32.3 bits (72), Expect = 0.45
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 121 LGVGAALATADDFLVFLRRSRQVAEAPGLVDVPGGHPEPQVNL 163
LGV L ++D ++ RR+R ++ +P L PGGH E + L
Sbjct: 93 LGVAVILQSSDKTVLLTRRARTLSVSPNLWVPPGGHVELEEEL 135
>gi|155722983 TNF receptor-associated protein 1 [Homo sapiens]
Length = 704
Score = 31.2 bits (69), Expect = 1.00
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 134 LVFLRRSRQVAEAPGLVDVPGGHPEPQVNLPLLTLSQPLLLGIARNETSAGRASAEFYVQ 193
L++ RR R + AP L VPGG P + P T +Q LG RN + +A F Q
Sbjct: 9 LLWGRRLRPLLRAPALAAVPGGKP---ILCPRRTTAQ---LGPRRNPAWSLQAGRLFSTQ 62
Query: 194 CSLTSEQVRKHYLSGGPEAHESTG--IFFVETQNVRRLPETEMWAE 237
+ E+ +S ST F ET+ + + +++E
Sbjct: 63 TAEDKEEPLHSIISSTESVQGSTSKHEFQAETKKLLDIVARSLYSE 108
>gi|126131104 fibrocystin isoform 2 [Homo sapiens]
Length = 3396
Score = 28.9 bits (63), Expect = 4.9
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 166 LTLSQPLLLGIARNETSAGRASAEFYVQCSLTSEQVRKHYLSGGPEAH---ESTGIFFVE 222
L +S L G+ R E S A+ YVQC LT + L P + ES+ FV
Sbjct: 1792 LDVSLAFLCGLKREEDSC-EAARHTYVQCDLTVAMATEQLLESWPYLYICEESSQCLFV- 1849
Query: 223 TQNVRRLPETEMWAE-LCPSAKGAII 247
+ WAE + PS G I
Sbjct: 1850 ---------PDHWAESMFPSFSGLFI 1866
>gi|126131102 fibrocystin isoform 1 [Homo sapiens]
Length = 4074
Score = 28.9 bits (63), Expect = 4.9
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 166 LTLSQPLLLGIARNETSAGRASAEFYVQCSLTSEQVRKHYLSGGPEAH---ESTGIFFVE 222
L +S L G+ R E S A+ YVQC LT + L P + ES+ FV
Sbjct: 1792 LDVSLAFLCGLKREEDSC-EAARHTYVQCDLTVAMATEQLLESWPYLYICEESSQCLFV- 1849
Query: 223 TQNVRRLPETEMWAE-LCPSAKGAII 247
+ WAE + PS G I
Sbjct: 1850 ---------PDHWAESMFPSFSGLFI 1866
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,162,125
Number of Sequences: 37866
Number of extensions: 599718
Number of successful extensions: 1333
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1326
Number of HSP's gapped (non-prelim): 11
length of query: 270
length of database: 18,247,518
effective HSP length: 101
effective length of query: 169
effective length of database: 14,423,052
effective search space: 2437495788
effective search space used: 2437495788
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.