Search of human proteins with 188497722

Search of human proteins with 188497722

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|188497722 cortexin 3 [Homo sapiens]
         (81 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|188497722 cortexin 3 [Homo sapiens]                                164   1e-41
gi|115392142 cortexin 3 [Homo sapiens]                                164   1e-41
gi|224586838 cortexin 2 [Homo sapiens]                                 85   1e-17
gi|45592954 cortexin 1 [Homo sapiens]                                  75   1e-14
gi|82830440 Fanconi anemia, complementation group I isoform 2 [H...    28   1.6  
gi|22035548 amyloid beta A4 precursor protein-binding, family A,...    28   2.1  
gi|189491660 UDP-galactose-ceramide galactosyltransferase 8 [Hom...    26   7.8  
gi|40254471 UDP-galactose-ceramide galactosyltransferase 8 [Homo...    26   7.8  
gi|50233848 olfactory receptor, family 4, subfamily D, member 5 ...    26   7.8  

>gi|188497722 cortexin 3 [Homo sapiens]
          Length = 81

 Score =  164 bits (415), Expect = 1e-41
 Identities = 81/81 (100%), Positives = 81/81 (100%)

Query: 1  MDGGQPIPSSLVPLGNESADSSMSLEQKMTFVFVILLFIFLGILIVRCFRILLDPYRSMP 60
          MDGGQPIPSSLVPLGNESADSSMSLEQKMTFVFVILLFIFLGILIVRCFRILLDPYRSMP
Sbjct: 1  MDGGQPIPSSLVPLGNESADSSMSLEQKMTFVFVILLFIFLGILIVRCFRILLDPYRSMP 60

Query: 61 TSTWADGLEGLEKGQFDHALA 81
          TSTWADGLEGLEKGQFDHALA
Sbjct: 61 TSTWADGLEGLEKGQFDHALA 81


>gi|115392142 cortexin 3 [Homo sapiens]
          Length = 81

 Score =  164 bits (415), Expect = 1e-41
 Identities = 81/81 (100%), Positives = 81/81 (100%)

Query: 1  MDGGQPIPSSLVPLGNESADSSMSLEQKMTFVFVILLFIFLGILIVRCFRILLDPYRSMP 60
          MDGGQPIPSSLVPLGNESADSSMSLEQKMTFVFVILLFIFLGILIVRCFRILLDPYRSMP
Sbjct: 1  MDGGQPIPSSLVPLGNESADSSMSLEQKMTFVFVILLFIFLGILIVRCFRILLDPYRSMP 60

Query: 61 TSTWADGLEGLEKGQFDHALA 81
          TSTWADGLEGLEKGQFDHALA
Sbjct: 61 TSTWADGLEGLEKGQFDHALA 81


>gi|224586838 cortexin 2 [Homo sapiens]
          Length = 81

 Score = 85.1 bits (209), Expect = 1e-17
 Identities = 40/66 (60%), Positives = 52/66 (78%)

Query: 16 NESADSSMSLEQKMTFVFVILLFIFLGILIVRCFRILLDPYRSMPTSTWADGLEGLEKGQ 75
          NE +  S++LEQK  F FV +L IFLG+LI+RCF+ILLDPY SMP+STW D +E  +KG 
Sbjct: 16 NEVSAFSLTLEQKTGFAFVGILCIFLGLLIIRCFKILLDPYSSMPSSTWEDEVEEFDKGT 75

Query: 76 FDHALA 81
          F++ALA
Sbjct: 76 FEYALA 81


>gi|45592954 cortexin 1 [Homo sapiens]
          Length = 82

 Score = 75.1 bits (183), Expect = 1e-14
 Identities = 35/73 (47%), Positives = 45/73 (61%)

Query: 8  PSSLVPLGNESADSSMSLEQKMTFVFVILLFIFLGILIVRCFRILLDPYRSMPTSTWADG 67
          P  L P       + +  EQ+  F FV+ L + L +L+VRC RILLDPY  MP S+W D 
Sbjct: 9  PEPLPPSTGPPVGAGLDAEQRTVFAFVLCLLVVLVLLMVRCVRILLDPYSRMPASSWTDH 68

Query: 68 LEGLEKGQFDHAL 80
           E LE+GQFD+AL
Sbjct: 69 KEALERGQFDYAL 81


>gi|82830440 Fanconi anemia, complementation group I isoform 2 [Homo
           sapiens]
          Length = 1268

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 25/72 (34%)

Query: 14  LGNESADSSMSLEQKMTFVFVILLFIFLGILIVRCFRILLDPYRSMPTSTWADG------ 67
           + N+++DS +S++             F+  L+   FR+LL  Y S+PTS    G      
Sbjct: 796 MANKTSDSLLSMK-------------FVSSLLTALFRVLLWRYTSIPTSVEESGKKEKGK 842

Query: 68  ------LEGLEK 73
                 LEGL+K
Sbjct: 843 SISLLCLEGLQK 854


>gi|22035548 amyloid beta A4 precursor protein-binding, family A,
           member 1 [Homo sapiens]
          Length = 837

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 1   MDGGQPIPSSLVPLGNESADSSM 23
           MDG  P P S  PLG ES+ +S+
Sbjct: 397 MDGDSPSPGSSSPLGAESSSTSL 419


>gi|189491660 UDP-galactose-ceramide galactosyltransferase 8 [Homo
           sapiens]
          Length = 541

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 4   GQPIPSSLVPLGNESADSSMSLEQKMTFVFVILLF-IFLGILIVRCFRILLDPYRSMPTS 62
           G P P + VP  N      M+L Q+M    V L+  + +  L++  +  ++  Y  +P  
Sbjct: 169 GAPAPLAYVPEFNSLLTDRMNLLQRMKNTGVYLISRLGVSFLVLPKYERIMQKYNLLPEK 228

Query: 63  TWADGLEG 70
           +  D + G
Sbjct: 229 SMYDLVHG 236


>gi|40254471 UDP-galactose-ceramide galactosyltransferase 8 [Homo
           sapiens]
          Length = 541

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 4   GQPIPSSLVPLGNESADSSMSLEQKMTFVFVILLF-IFLGILIVRCFRILLDPYRSMPTS 62
           G P P + VP  N      M+L Q+M    V L+  + +  L++  +  ++  Y  +P  
Sbjct: 169 GAPAPLAYVPEFNSLLTDRMNLLQRMKNTGVYLISRLGVSFLVLPKYERIMQKYNLLPEK 228

Query: 63  TWADGLEG 70
           +  D + G
Sbjct: 229 SMYDLVHG 236


>gi|50233848 olfactory receptor, family 4, subfamily D, member 5
           [Homo sapiens]
          Length = 318

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 30  TFVFVILLFIFLGILIVRCFRILLDPYRSMPTSTWADGLEGLEK 73
           TFV  +L+    G++ + CF +LL  Y ++     +   EG  K
Sbjct: 192 TFVLELLMVSNNGLVTLMCFLVLLGSYTALLVMLRSHSREGRSK 235


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.142    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,076,734
Number of Sequences: 37866
Number of extensions: 95090
Number of successful extensions: 344
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 337
Number of HSP's gapped (non-prelim): 9
length of query: 81
length of database: 18,247,518
effective HSP length: 53
effective length of query: 28
effective length of database: 16,240,620
effective search space: 454737360
effective search space used: 454737360
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.