Search of human proteins with 187169266

Search of human proteins with 187169266

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|187169266 GINS complex subunit 3 isoform c [Homo sapiens]
         (138 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|187169266 GINS complex subunit 3 isoform c [Homo sapiens]          277   2e-75
gi|187169264 GINS complex subunit 3 isoform a [Homo sapiens]          160   4e-40
gi|21362088 GINS complex subunit 3 isoform b [Homo sapiens]           160   4e-40
gi|115511030 hypothetical protein LOC115004 [Homo sapiens]             30   0.83 
gi|51477716 mannosidase, alpha, class 2A, member 2 [Homo sapiens]      29   1.4  
gi|239752818 PREDICTED: hypothetical protein [Homo sapiens]            26   9.2  
gi|19743907 RAR-related orphan receptor B [Homo sapiens]               26   9.2  

>gi|187169266 GINS complex subunit 3 isoform c [Homo sapiens]
          Length = 138

 Score =  277 bits (708), Expect = 2e-75
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 1   MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAV 60
           MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAV
Sbjct: 1   MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAV 60

Query: 61  PQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEKGQASQIT 120
           PQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEKGQASQIT
Sbjct: 61  PQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEKGQASQIT 120

Query: 121 ASNLVQNYKKRKFTDMED 138
           ASNLVQNYKKRKFTDMED
Sbjct: 121 ASNLVQNYKKRKFTDMED 138


>gi|187169264 GINS complex subunit 3 isoform a [Homo sapiens]
          Length = 255

 Score =  160 bits (404), Expect = 4e-40
 Identities = 78/85 (91%), Positives = 81/85 (95%)

Query: 54  AETDNAVPQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEK 113
           A+   ++ QTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEK
Sbjct: 171 ADISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEK 230

Query: 114 GQASQITASNLVQNYKKRKFTDMED 138
           GQASQITASNLVQNYKKRKFTDMED
Sbjct: 231 GQASQITASNLVQNYKKRKFTDMED 255



 Score =  126 bits (317), Expect = 5e-30
 Identities = 63/64 (98%), Positives = 63/64 (98%)

Query: 1  MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAV 60
          MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAV
Sbjct: 1  MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAV 60

Query: 61 PQTF 64
          PQ F
Sbjct: 61 PQGF 64


>gi|21362088 GINS complex subunit 3 isoform b [Homo sapiens]
          Length = 216

 Score =  160 bits (404), Expect = 4e-40
 Identities = 78/85 (91%), Positives = 81/85 (95%)

Query: 54  AETDNAVPQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEK 113
           A+   ++ QTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEK
Sbjct: 132 ADISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEK 191

Query: 114 GQASQITASNLVQNYKKRKFTDMED 138
           GQASQITASNLVQNYKKRKFTDMED
Sbjct: 192 GQASQITASNLVQNYKKRKFTDMED 216



 Score =  125 bits (313), Expect = 1e-29
 Identities = 62/62 (100%), Positives = 62/62 (100%)

Query: 1  MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAV 60
          MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAV
Sbjct: 1  MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAV 60

Query: 61 PQ 62
          PQ
Sbjct: 61 PQ 62


>gi|115511030 hypothetical protein LOC115004 [Homo sapiens]
          Length = 522

 Score = 29.6 bits (65), Expect = 0.83
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 9  ESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAVPQT 63
          E+GA  P+ +  +     M   + P   E A+P+ G F   R +G+    + P T
Sbjct: 14 EAGATAPKASARNARGAPMDPTESPAAPEAALPKAGKFGPARKSGSRQKKSAPDT 68


>gi|51477716 mannosidase, alpha, class 2A, member 2 [Homo sapiens]
          Length = 1150

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 15  PEENFLSLDDILMSHEKLPVRT 36
           PE  FL +DD  +SH+ LP RT
Sbjct: 618 PEAPFLQVDDTRLSHDALPERT 639


>gi|239752818 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 181

 Score = 26.2 bits (56), Expect = 9.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 35  RTETAMPRLGAFFLERSAGAETDNAVPQT 63
           ++ +A PRLG FF +R  G+E     P++
Sbjct: 92  KSPSAAPRLGGFFRKRLGGSEEAEDGPES 120


>gi|19743907 RAR-related orphan receptor B [Homo sapiens]
          Length = 459

 Score = 26.2 bits (56), Expect = 9.2
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 2   SEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRL 43
           SE Y+ V+SG   P+++ L +  I    ++ P+   T++P L
Sbjct: 152 SEGYYNVDSGQPSPDQSGLDMTGIKQIKQE-PIYDLTSVPNL 192


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.131    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,424,637
Number of Sequences: 37866
Number of extensions: 159404
Number of successful extensions: 360
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 352
Number of HSP's gapped (non-prelim): 9
length of query: 138
length of database: 18,247,518
effective HSP length: 91
effective length of query: 47
effective length of database: 14,801,712
effective search space: 695680464
effective search space used: 695680464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.