Guide to the Human Genome
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Name: TRPC4AP Sequence: fasta or formatted (797aa) NCBI GI: 18158416
Description:

TRPC4-associated protein isoform a

Not currently referenced in the text

Other entries for this name:
alt prot {789aa} TRPC4-associated protein isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         47           3
 C cysteine            2.1         17           1
 D aspartate           4.5         36           2
 E glutamate           6.6         53           2
 F phenylalanine       4.6         37           1
 G glycine             4.1         33           2
 H histidine           2.4         19           2
 I isoleucine          5.1         41           2
 K lysine              5.6         45           2
 L leucine            14.4        115           3
 M methionine          2.9         23           1
 N asparagine          5.0         40           2
 P proline             3.1         25           3
 Q glutamine           5.1         41           3
 R arginine            5.6         45           2
 S serine              7.9         63           2
 T threonine           5.5         44           2
 V valine              5.8         46           1
 W tryptophan          1.1          9           1
 Y tyrosine            2.3         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TRPC4-associated protein isoform a 
TRPC4AP               0.985   TRPC4-associated protein isoform b 
LOC100290946          0.005   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.005   PREDICTED: hypothetical protein XP_002344246 
GJA10                 0.005   gap junction protein, alpha 10 
IFT74                 0.004   coiled-coil domain containing 2 isoform a 
IFT74                 0.004   coiled-coil domain containing 2 isoform a 
IFT74                 0.004   coiled-coil domain containing 2 isoform a 
CC2D1B                0.004   coiled-coil and C2 domain containing 1B 
SEC14L1               0.003   SEC14 (S. cerevisiae)-like 1 isoform c 
SEC14L1               0.003   SEC14 (S. cerevisiae)-like 1 isoform a 
SEC14L1               0.003   SEC14 (S. cerevisiae)-like 1 isoform a 
CYP11A1               0.003   cytochrome P450, family 11, subfamily A, polypeptid...
CYP11A1               0.003   cytochrome P450, family 11, subfamily A, polypeptid...
SEC14L1               0.003   SEC14 (S. cerevisiae)-like 1 isoform b 
SEC14L1               0.003   SEC14 (S. cerevisiae)-like 1 isoform a 
NFATC2IP              0.003   nuclear factor of activated T-cells, cytoplasmic, ca...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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