Guide to the Human Genome
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Name: LOC100129144 Sequence: fasta or formatted (276aa) NCBI GI: 169216287
Description:

PREDICTED: similar to hCG2042189

Not currently referenced in the text

Other entries for this name:
alt mRNA {276aa} PREDICTED: hypothetical protein LOC100129144
alt mRNA {276aa} PREDICTED: similar to hCG2042189
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.5          7           1
 C cysteine            4.3         12           1
 D aspartate           0.4          1           1
 E glutamate           9.1         25           2
 F phenylalanine       4.0         11           1
 G glycine             5.1         14           1
 H histidine           6.9         19           1
 I isoleucine          8.0         22           2
 K lysine             15.2         42           2
 L leucine             4.7         13           2
 M methionine          1.4          4           1
 N asparagine          4.7         13           1
 P proline             2.9          8           1
 Q glutamine           4.0         11           1
 R arginine            4.0         11           1
 S serine              7.6         21           2
 T threonine           8.3         23           2
 V valine              1.1          3           1
 W tryptophan          0.4          1           1
 Y tyrosine            5.4         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2042189 
LOC100129144          1.000   PREDICTED: similar to hCG2042189 
LOC100129144          1.000   PREDICTED: hypothetical protein LOC100129144 
ZNF681                0.583   zinc finger protein 681 
ZNF431                0.526   zinc finger protein 431 
ZNF85                 0.524   zinc finger protein 85 
ZNF257                0.517   zinc finger protein 257 
ZNF714                0.517   zinc finger protein 714 
ZNF730                0.508   PREDICTED: zinc finger protein 730 
ZNF730                0.508   PREDICTED: zinc finger protein 730 
ZNF675                0.508   zinc finger protein 675 
ZNF100                0.508   zinc finger protein 100 
LOC646864             0.506   PREDICTED: similar to hCG36734 
LOC646864             0.506   PREDICTED: similar to hCG36734 
LOC646864             0.506   PREDICTED: similar to hCG36734 
ZNF43                 0.506   zinc finger protein 43 
ZNF430                0.504   zinc finger protein 430 
LOC730110             0.504   PREDICTED: Zinc finger protein ENSP00000351689 [Hom...
ZNF730                0.504   PREDICTED: zinc finger protein 730 
ZNF492                0.504   zinc finger protein 492 
ZNF98                 0.503   zinc finger protein 98 
ZNF626                0.501   zinc finger protein 626 isoform 1 
ZNF708                0.501   zinc finger protein 708 
LOC730110             0.501   PREDICTED: Zinc finger protein ENSP00000351689 [Hom...
LOC730110             0.501   PREDICTED: Zinc finger protein ENSP00000351689 [Hom...
ZNF737                0.499   zinc finger protein 737 
ZNF66                 0.499   PREDICTED: zinc finger protein 66 
ZNF737                0.499   PREDICTED: zinc finger protein 737 
ZNF66                 0.499   PREDICTED: zinc finger protein 66 
ZNF737                0.499   PREDICTED: zinc finger protein 737 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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