Search of human proteins with 111607482

Search of human proteins with 111607482

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|111607482 transmembrane protein 140 [Homo sapiens]
         (185 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|111607482 transmembrane protein 140 [Homo sapiens]                 372   e-104
gi|116325983 transmembrane protein 37 [Homo sapiens]                   35   0.028
gi|153791876 olfactory receptor, family 6, subfamily Q, member 1...    32   0.41 
gi|4503563 epithelial membrane protein 3 [Homo sapiens]                30   1.5  
gi|119120834 tetraspanin 10 [Homo sapiens]                             30   1.5  
gi|4504095 motilin receptor [Homo sapiens]                             28   4.5  
gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens]                      28   5.9  
gi|33589827 cholinergic receptor, nicotinic, alpha 5 [Homo sapiens]    27   7.7  
gi|122939153 nicotinamide nucleotide transhydrogenase [Homo sapi...    27   7.7  
gi|122939155 nicotinamide nucleotide transhydrogenase [Homo sapi...    27   7.7  

>gi|111607482 transmembrane protein 140 [Homo sapiens]
          Length = 185

 Score =  372 bits (956), Expect = e-104
 Identities = 185/185 (100%), Positives = 185/185 (100%)

Query: 1   MAGPRPRWRDQLLFMSIIVLVIVVICLMFYALLWEAGNLTDLPNLRIGFYNFCLWNEDTS 60
           MAGPRPRWRDQLLFMSIIVLVIVVICLMFYALLWEAGNLTDLPNLRIGFYNFCLWNEDTS
Sbjct: 1   MAGPRPRWRDQLLFMSIIVLVIVVICLMFYALLWEAGNLTDLPNLRIGFYNFCLWNEDTS 60

Query: 61  TLQCHQFPELEALGVPRVGLGLARLGVYGSLVLTLFAPQPLLLAQCNSDERAWRLAVGFL 120
           TLQCHQFPELEALGVPRVGLGLARLGVYGSLVLTLFAPQPLLLAQCNSDERAWRLAVGFL
Sbjct: 61  TLQCHQFPELEALGVPRVGLGLARLGVYGSLVLTLFAPQPLLLAQCNSDERAWRLAVGFL 120

Query: 121 AVSSVLLAGGLGLFLSYVWKWVRLSLPGPGFLALGSAQALLILLLIAMAVFPLRAERAES 180
           AVSSVLLAGGLGLFLSYVWKWVRLSLPGPGFLALGSAQALLILLLIAMAVFPLRAERAES
Sbjct: 121 AVSSVLLAGGLGLFLSYVWKWVRLSLPGPGFLALGSAQALLILLLIAMAVFPLRAERAES 180

Query: 181 KLESC 185
           KLESC
Sbjct: 181 KLESC 185


>gi|116325983 transmembrane protein 37 [Homo sapiens]
          Length = 190

 Score = 35.4 bits (80), Expect = 0.028
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 52  FCLWNEDTSTLQCHQFPELEALGVP--RVGLGLARLGVYGSLVLTLFAPQPLLLAQCNSD 109
           F LW+  T+T Q   F +L    VP   VG+GL R     ++V  +F  + L+++Q   D
Sbjct: 58  FGLWHFCTTTNQTICFRDLGQAHVPGLAVGMGLVRSVGALAVVAAIFGLEFLMVSQLCED 117

Query: 110 ERA---WRLAVGFLAVSSVLLAGGL 131
           + +   W +    L VS VL +GGL
Sbjct: 118 KHSQCKWVMGSILLLVSFVLSSGGL 142


>gi|153791876 olfactory receptor, family 6, subfamily Q, member 1
           [Homo sapiens]
          Length = 317

 Score = 31.6 bits (70), Expect = 0.41
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 7/88 (7%)

Query: 82  LARLGVYGSLVLTLFA--PQPLLLAQCNSDERAWRLAVGFLAVSSVLLAGGLGLFLSY-- 137
           L++L  YG  V+  F+    PLL   C+  +  W+  V FL   +VLLA  + + +SY  
Sbjct: 167 LSQLTFYGPNVIDHFSCDASPLLALSCS--DVTWKETVDFLVSLAVLLASSMVIAVSYGN 224

Query: 138 -VWKWVRLSLPGPGFLALGSAQALLILL 164
            VW  + +      + A  +  A L ++
Sbjct: 225 IVWTLLHIRSAAERWKAFSTCAAHLTVV 252


>gi|4503563 epithelial membrane protein 3 [Homo sapiens]
          Length = 163

 Score = 29.6 bits (65), Expect = 1.5
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 12 LLFMSIIVLVIVVICLMFYALLWEAGNLTDLPNLR-IGFYNFCLWNEDTSTLQCHQFPEL 70
          LL + +  L I+++ L+F A L ++     LP    +  +  C WN DT T  C    E 
Sbjct: 3  LLLLVVSALHILILILLFVATLDKSW--WTLPGKESLNLWYDCTWNNDTKTWACSNVSEN 60

Query: 71 EALGVPRVGLGLARLGVYGSLVLTLF 96
            L   +V + L+ +    S +L +F
Sbjct: 61 GWLKAVQVLMVLSLILCCLSFILFMF 86


>gi|119120834 tetraspanin 10 [Homo sapiens]
          Length = 355

 Score = 29.6 bits (65), Expect = 1.5
 Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 8/60 (13%)

Query: 73  LGVPRVGLGLARLGVYGSLVLTLFAPQPLLLAQCNSDERAWRLAVGFLAVSSVLLAGGLG 132
           LG+  + +GL  L V GSL   L  P P         +    LA+G L VS+V LAG LG
Sbjct: 90  LGLLALAIGLWGLAVKGSLGSDLGGPLPA--------DPMLGLALGGLVVSAVSLAGYLG 141


>gi|4504095 motilin receptor [Homo sapiens]
          Length = 412

 Score = 28.1 bits (61), Expect = 4.5
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 9/83 (10%)

Query: 63  QCHQFPELEALGVPRVGLGLARLGVYGSLVLTLFAPQPLLLAQCNSDERAWRLAVGFLAV 122
           +C  FP    + V  V L L  +GV G++V  +      L+ +         L +G +AV
Sbjct: 29  RCSPFPLGALVPVTAVCLCLFVVGVSGNVVTVM------LIGRYRDMRTTTNLYLGSMAV 82

Query: 123 SSVLLAGGLGLFLSYVWK---WV 142
           S +L+  GL   L  +W+   WV
Sbjct: 83  SDLLILLGLPFDLYRLWRSRPWV 105


>gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens]
          Length = 1235

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 33/95 (34%), Positives = 38/95 (40%), Gaps = 10/95 (10%)

Query: 66   QFPELEALGVPRVGLGLARLGVYGSLVLTLFAPQPLLLAQCNSDERAWRLAVGFLAVSSV 125
            Q P L + G+   GL  A     G L L L    PLL AQ     +A  LA         
Sbjct: 942  QLPGLLSHGL-LAGLSFAVGSSSGLLPLLLLLLLPLLAAQGGGGLQAALLA--------- 991

Query: 126  LLAGGLGLFLSYVWKWVRLSLPGPGFLALGSAQAL 160
            L  G +GL  SY+     L LP   FL L    AL
Sbjct: 992  LEVGLVGLGASYLLLCTALHLPSSLFLLLAQGTAL 1026


>gi|33589827 cholinergic receptor, nicotinic, alpha 5 [Homo sapiens]
          Length = 468

 Score = 27.3 bits (59), Expect = 7.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 125 VLLAGGLGLFLSYVWKWVRLSLP 147
           V + G LGLF+  ++KW  + +P
Sbjct: 438 VSIVGSLGLFVPVIYKWANILIP 460


>gi|122939153 nicotinamide nucleotide transhydrogenase [Homo
           sapiens]
          Length = 1086

 Score = 27.3 bits (59), Expect = 7.7
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 70  LEALGVPRVGLGLARLGVYGSLVLTL--FAPQPLLLAQ 105
           L   G  R+G  L  +GV G L  TL    P P LLAQ
Sbjct: 638 LSTQGTARLGNALGMIGVAGGLAATLGVLKPGPELLAQ 675


>gi|122939155 nicotinamide nucleotide transhydrogenase [Homo
           sapiens]
          Length = 1086

 Score = 27.3 bits (59), Expect = 7.7
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 70  LEALGVPRVGLGLARLGVYGSLVLTL--FAPQPLLLAQ 105
           L   G  R+G  L  +GV G L  TL    P P LLAQ
Sbjct: 638 LSTQGTARLGNALGMIGVAGGLAATLGVLKPGPELLAQ 675


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.329    0.144    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,099,758
Number of Sequences: 37866
Number of extensions: 289181
Number of successful extensions: 801
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 795
Number of HSP's gapped (non-prelim): 12
length of query: 185
length of database: 18,247,518
effective HSP length: 96
effective length of query: 89
effective length of database: 14,612,382
effective search space: 1300501998
effective search space used: 1300501998
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.