Search of human proteins with 169213259

Search of human proteins with 169213259

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169213259 PREDICTED: hypothetical protein [Homo sapiens]
         (59 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169213860 PREDICTED: hypothetical protein [Homo sapiens]           121   1e-28
gi|169214297 PREDICTED: hypothetical protein [Homo sapiens]           121   1e-28
gi|169213259 PREDICTED: hypothetical protein [Homo sapiens]           121   1e-28
gi|70980552 secretoglobin-like [Homo sapiens]                          38   0.002
gi|122937229 zinc finger protein 629 [Homo sapiens]                    29   0.93 
gi|110815807 zinc finger protein 169 [Homo sapiens]                    26   6.1  

>gi|169213860 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 59

 Score =  121 bits (304), Expect = 1e-28
 Identities = 59/59 (100%), Positives = 59/59 (100%)

Query: 1  MRMTPTACALLLALICSVQLGEKEAGRAERKQVALLLHRHCHPRVSAVTIADICQGRFQ 59
          MRMTPTACALLLALICSVQLGEKEAGRAERKQVALLLHRHCHPRVSAVTIADICQGRFQ
Sbjct: 1  MRMTPTACALLLALICSVQLGEKEAGRAERKQVALLLHRHCHPRVSAVTIADICQGRFQ 59


>gi|169214297 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 59

 Score =  121 bits (304), Expect = 1e-28
 Identities = 59/59 (100%), Positives = 59/59 (100%)

Query: 1  MRMTPTACALLLALICSVQLGEKEAGRAERKQVALLLHRHCHPRVSAVTIADICQGRFQ 59
          MRMTPTACALLLALICSVQLGEKEAGRAERKQVALLLHRHCHPRVSAVTIADICQGRFQ
Sbjct: 1  MRMTPTACALLLALICSVQLGEKEAGRAERKQVALLLHRHCHPRVSAVTIADICQGRFQ 59


>gi|169213259 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 59

 Score =  121 bits (304), Expect = 1e-28
 Identities = 59/59 (100%), Positives = 59/59 (100%)

Query: 1  MRMTPTACALLLALICSVQLGEKEAGRAERKQVALLLHRHCHPRVSAVTIADICQGRFQ 59
          MRMTPTACALLLALICSVQLGEKEAGRAERKQVALLLHRHCHPRVSAVTIADICQGRFQ
Sbjct: 1  MRMTPTACALLLALICSVQLGEKEAGRAERKQVALLLHRHCHPRVSAVTIADICQGRFQ 59


>gi|70980552 secretoglobin-like [Homo sapiens]
          Length = 96

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 17/22 (77%), Positives = 19/22 (86%)

Query: 1  MRMTPTACALLLALICSVQLGE 22
          MR+T   CALLLALICSVQLG+
Sbjct: 1  MRVTSATCALLLALICSVQLGD 22


>gi|122937229 zinc finger protein 629 [Homo sapiens]
          Length = 869

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 13/23 (56%), Positives = 14/23 (60%)

Query: 24  EAGRAERKQVALLLHRHCHPRVS 46
           E G    +  ALLLHR CHP VS
Sbjct: 846 ECGAGFTEVAALLLHRSCHPGVS 868


>gi|110815807 zinc finger protein 169 [Homo sapiens]
          Length = 603

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 23  KEAGRAERKQVALLLHRHCH 42
           +E GR  R+++ALLLH+  H
Sbjct: 321 QECGRGFRQKIALLLHQRTH 340


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.330    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,122,372
Number of Sequences: 37866
Number of extensions: 58468
Number of successful extensions: 354
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 7
length of query: 59
length of database: 18,247,518
effective HSP length: 32
effective length of query: 27
effective length of database: 17,035,806
effective search space: 459966762
effective search space used: 459966762
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.