Search of human proteins with 169209690

Search of human proteins with 169209690

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169209690 PREDICTED: hypothetical protein LOC728138, partial
[Homo sapiens]
         (222 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169209690 PREDICTED: hypothetical protein LOC728138, partial ...   458   e-129
gi|25286703 hypothetical protein LOC90231 [Homo sapiens]              444   e-125
gi|145580608 WD repeat domain 62 isoform 1 [Homo sapiens]              30   2.1  
gi|145580610 WD repeat domain 62 isoform 2 [Homo sapiens]              30   2.1  
gi|21553331 solute carrier family 2 (facilitated glucose transpo...    29   3.7  
gi|83367077 mucin 16 [Homo sapiens]                                    28   8.2  
gi|4506753 RuvB-like 1 [Homo sapiens]                                  28   8.2  

>gi|169209690 PREDICTED: hypothetical protein LOC728138, partial
           [Homo sapiens]
          Length = 222

 Score =  458 bits (1178), Expect = e-129
 Identities = 222/222 (100%), Positives = 222/222 (100%)

Query: 1   WPGLLSSVQQILQLSDLWRLTLQKSGCKGLVKVGAPGILQGMVLSFGGLQFTENHLQFQA 60
           WPGLLSSVQQILQLSDLWRLTLQKSGCKGLVKVGAPGILQGMVLSFGGLQFTENHLQFQA
Sbjct: 1   WPGLLSSVQQILQLSDLWRLTLQKSGCKGLVKVGAPGILQGMVLSFGGLQFTENHLQFQA 60

Query: 61  DPDVLQNSYALHGIRYKNDHINLAVLADAEGKPYLHESVESRGQPVKIYACKAGCLDEPV 120
           DPDVLQNSYALHGIRYKNDHINLAVLADAEGKPYLHESVESRGQPVKIYACKAGCLDEPV
Sbjct: 61  DPDVLQNSYALHGIRYKNDHINLAVLADAEGKPYLHESVESRGQPVKIYACKAGCLDEPV 120

Query: 121 ELTSAPTGHTFSVMVTQPITPLLYISTDLTHLQDLRHTLHLKAILAHDEHMAQQDPGLPF 180
           ELTSAPTGHTFSVMVTQPITPLLYISTDLTHLQDLRHTLHLKAILAHDEHMAQQDPGLPF
Sbjct: 121 ELTSAPTGHTFSVMVTQPITPLLYISTDLTHLQDLRHTLHLKAILAHDEHMAQQDPGLPF 180

Query: 181 LFWFSLASLITLFHLFLFKLIYNEYCGPGAKPLCRSKEDPSV 222
           LFWFSLASLITLFHLFLFKLIYNEYCGPGAKPLCRSKEDPSV
Sbjct: 181 LFWFSLASLITLFHLFLFKLIYNEYCGPGAKPLCRSKEDPSV 222


>gi|25286703 hypothetical protein LOC90231 [Homo sapiens]
          Length = 634

 Score =  444 bits (1141), Expect = e-125
 Identities = 216/222 (97%), Positives = 217/222 (97%)

Query: 1   WPGLLSSVQQILQLSDLWRLTLQKSGCKGLVKVGAPGILQGMVLSFGGLQFTENHLQFQA 60
           WPG LSSVQQILQLSDLWRLTLQK GCKGLVKVGAPGILQGMVLSFGGLQFTENHLQFQA
Sbjct: 413 WPGRLSSVQQILQLSDLWRLTLQKRGCKGLVKVGAPGILQGMVLSFGGLQFTENHLQFQA 472

Query: 61  DPDVLQNSYALHGIRYKNDHINLAVLADAEGKPYLHESVESRGQPVKIYACKAGCLDEPV 120
           DPDVL NSYALHGIRYKNDHINLAVLADAEGKPYLH SVESRGQPVKIYACKAGCLDEPV
Sbjct: 473 DPDVLHNSYALHGIRYKNDHINLAVLADAEGKPYLHVSVESRGQPVKIYACKAGCLDEPV 532

Query: 121 ELTSAPTGHTFSVMVTQPITPLLYISTDLTHLQDLRHTLHLKAILAHDEHMAQQDPGLPF 180
           ELTSAPTGHTFSVMVTQPITPLLYISTDLTHLQDLRHTLHLKAILAHDEHMAQQDPGLPF
Sbjct: 533 ELTSAPTGHTFSVMVTQPITPLLYISTDLTHLQDLRHTLHLKAILAHDEHMAQQDPGLPF 592

Query: 181 LFWFSLASLITLFHLFLFKLIYNEYCGPGAKPLCRSKEDPSV 222
           LFWFS+ASLITLFHLFLFKLIYNEYCGPGAKPL RSKEDPSV
Sbjct: 593 LFWFSVASLITLFHLFLFKLIYNEYCGPGAKPLFRSKEDPSV 634


>gi|145580608 WD repeat domain 62 isoform 1 [Homo sapiens]
          Length = 1523

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 122 LTSAPTGHTFSVMVTQPITPLLYISTDLTHLQDLRH 157
           L S+P  H    + +  +  ++Y+  D+ HLQD+ H
Sbjct: 442 LDSSPDSHWQKNIFSNTLLKVVYVENDIQHLQDMSH 477


>gi|145580610 WD repeat domain 62 isoform 2 [Homo sapiens]
          Length = 1518

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 122 LTSAPTGHTFSVMVTQPITPLLYISTDLTHLQDLRH 157
           L S+P  H    + +  +  ++Y+  D+ HLQD+ H
Sbjct: 442 LDSSPDSHWQKNIFSNTLLKVVYVENDIQHLQDMSH 477


>gi|21553331 solute carrier family 2 (facilitated glucose
           transporter), member 12 [Homo sapiens]
          Length = 617

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 161 LKAILAHDEHMAQQDPG-LP-FLFWFSLASLITLFHLF 196
           L A L+H E+    DPG +P FL W SLASL+     F
Sbjct: 438 LNAGLSHTEYQIVTDPGDVPAFLKWLSLASLLVYVAAF 475


>gi|83367077 mucin 16 [Homo sapiens]
          Length = 14507

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 98   SVESRGQPVKIYACKAGCLDEPVELTSAPTGHTFSVMVTQPITPLLYISTDL 149
            SVE    P  + +  A     P+  T + + H+  + VT   TP++  +TD+
Sbjct: 8846 SVEKTSPPSSLVSLSAVTSPSPLYSTPSESSHSSPLRVTSLFTPVMMKTTDM 8897


>gi|4506753 RuvB-like 1 [Homo sapiens]
          Length = 456

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 86  LADAEGKPYLHESVESRGQPVKIYACKAG-CLDEPVELTSAPTGHTFSVMVTQPITPLLY 144
           + D E   YLH ++ES   P+ I+A   G C+    E  ++P G    +     +  ++ 
Sbjct: 306 MLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDL-----LDRVMI 360

Query: 145 ISTDLTHLQDLRHTLHLKA 163
           I T L   Q+++  + ++A
Sbjct: 361 IRTMLYTPQEMKQIIKIRA 379


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.139    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,062,295
Number of Sequences: 37866
Number of extensions: 393204
Number of successful extensions: 672
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 664
Number of HSP's gapped (non-prelim): 10
length of query: 222
length of database: 18,247,518
effective HSP length: 98
effective length of query: 124
effective length of database: 14,536,650
effective search space: 1802544600
effective search space used: 1802544600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.