Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100127951 Sequence: fasta or formatted (88aa) NCBI GI: 169209428
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {88aa} PREDICTED: hypothetical protein
alt prot {88aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.4          3           2
 C cysteine            2.3          2           1
 D aspartate           0.0          0           0
 E glutamate           2.3          2           1
 F phenylalanine       4.5          4           1
 G glycine             6.8          6           1
 H histidine           2.3          2           1
 I isoleucine          8.0          7           1
 K lysine              5.7          5           1
 L leucine            14.8         13           2
 M methionine          4.5          4           1
 N asparagine          1.1          1           1
 P proline             9.1          8           1
 Q glutamine           2.3          2           1
 R arginine            8.0          7           1
 S serine              8.0          7           2
 T threonine           4.5          4           1
 V valine              6.8          6           1
 W tryptophan          1.1          1           1
 Y tyrosine            4.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100127951          0.981   PREDICTED: hypothetical protein 
LOC100127951          0.981   PREDICTED: hypothetical protein 
SLC22A2               0.013   solute carrier family 22 member 2 
TMEM86B               0.013   transmembrane protein 86B 
TMEM70                0.006   transmembrane protein 70 isoform b 
TMEM70                0.006   transmembrane protein 70 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press