Search of human proteins with 169189860

Search of human proteins with 169189860

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169189860 PREDICTED: similar to Cathepsin L1 [Homo sapiens]
         (51 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169189860 PREDICTED: similar to Cathepsin L1 [Homo sapiens]        109   5e-25
gi|22202619 cathepsin L1 preproprotein [Homo sapiens]                  94   2e-20
gi|4503155 cathepsin L1 preproprotein [Homo sapiens]                   94   2e-20
gi|23110960 cathepsin L2 preproprotein [Homo sapiens]                  74   2e-14
gi|4503151 cathepsin K preproprotein [Homo sapiens]                    29   0.91 
gi|23110962 cathepsin S preproprotein [Homo sapiens]                   28   2.0  

>gi|169189860 PREDICTED: similar to Cathepsin L1 [Homo sapiens]
          Length = 51

 Score =  109 bits (272), Expect = 5e-25
 Identities = 51/51 (100%), Positives = 51/51 (100%)

Query: 1  MNPSLLLAAFFLGIASAALTRDHSLDAQWTKWKAKHKRLYGMNEEGWRRAV 51
          MNPSLLLAAFFLGIASAALTRDHSLDAQWTKWKAKHKRLYGMNEEGWRRAV
Sbjct: 1  MNPSLLLAAFFLGIASAALTRDHSLDAQWTKWKAKHKRLYGMNEEGWRRAV 51


>gi|22202619 cathepsin L1 preproprotein [Homo sapiens]
          Length = 333

 Score = 94.0 bits (232), Expect = 2e-20
 Identities = 43/51 (84%), Positives = 46/51 (90%)

Query: 1  MNPSLLLAAFFLGIASAALTRDHSLDAQWTKWKAKHKRLYGMNEEGWRRAV 51
          MNP+L+LAAF LGIASA LT DHSL+AQWTKWKA H RLYGMNEEGWRRAV
Sbjct: 1  MNPTLILAAFCLGIASATLTFDHSLEAQWTKWKAMHNRLYGMNEEGWRRAV 51


>gi|4503155 cathepsin L1 preproprotein [Homo sapiens]
          Length = 333

 Score = 94.0 bits (232), Expect = 2e-20
 Identities = 43/51 (84%), Positives = 46/51 (90%)

Query: 1  MNPSLLLAAFFLGIASAALTRDHSLDAQWTKWKAKHKRLYGMNEEGWRRAV 51
          MNP+L+LAAF LGIASA LT DHSL+AQWTKWKA H RLYGMNEEGWRRAV
Sbjct: 1  MNPTLILAAFCLGIASATLTFDHSLEAQWTKWKAMHNRLYGMNEEGWRRAV 51


>gi|23110960 cathepsin L2 preproprotein [Homo sapiens]
          Length = 334

 Score = 74.3 bits (181), Expect = 2e-14
 Identities = 35/51 (68%), Positives = 40/51 (78%)

Query: 1  MNPSLLLAAFFLGIASAALTRDHSLDAQWTKWKAKHKRLYGMNEEGWRRAV 51
          MN SL+LAAF LGIASA    D +LD +W +WKA H+RLYG NEEGWRRAV
Sbjct: 1  MNLSLVLAAFCLGIASAVPKFDQNLDTKWYQWKATHRRLYGANEEGWRRAV 51


>gi|4503151 cathepsin K preproprotein [Homo sapiens]
          Length = 329

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 7  LAAFFLGIASAALTRDHSLDAQWTKWKAKHKRLY 40
          L    L + S AL  +  LD  W  WK  H++ Y
Sbjct: 4  LKVLLLPVVSFALYPEEILDTHWELWKKTHRKQY 37


>gi|23110962 cathepsin S preproprotein [Homo sapiens]
          Length = 331

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 15 ASAALTRDHSLDAQWTKWKAKHKRLY-GMNEEGWRRAV 51
          A A L +D +LD  W  WK  + + Y   NEE  RR +
Sbjct: 14 AVAQLHKDPTLDHHWHLWKKTYGKQYKEKNEEAVRRLI 51


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.131    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,882,301
Number of Sequences: 37866
Number of extensions: 44952
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 163
Number of HSP's gapped (non-prelim): 6
length of query: 51
length of database: 18,247,518
effective HSP length: 25
effective length of query: 26
effective length of database: 17,300,868
effective search space: 449822568
effective search space used: 449822568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.