Search of human proteins with 169162584

Search of human proteins with 169162584

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169162584 PREDICTED: hypothetical protein LOC100132108 [Homo
sapiens]
         (194 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169162584 PREDICTED: hypothetical protein LOC100132108 [Homo ...   390   e-109
gi|169161813 PREDICTED: similar to hCG1644176 [Homo sapiens]          388   e-108
gi|25777615 proteasome 26S non-ATPase subunit 7 [Homo sapiens]        290   7e-79
gi|4503519 eukaryotic translation initiation factor 3, subunit 5...    59   3e-09
gi|34147637 COP9 signalosome subunit 6 [Homo sapiens]                  43   2e-04
gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2...    27   8.4  
gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1...    27   8.4  
gi|57863255 zinc finger, SWIM domain containing 3 [Homo sapiens]       27   8.4  

>gi|169162584 PREDICTED: hypothetical protein LOC100132108 [Homo
           sapiens]
          Length = 194

 Score =  390 bits (1001), Expect = e-109
 Identities = 194/194 (100%), Positives = 194/194 (100%)

Query: 1   MKVLDVSSSFTVPFNEDDKDNCFLAHDYLKNTYRMFKRVNARERIVEWYHIGPKLHKNDT 60
           MKVLDVSSSFTVPFNEDDKDNCFLAHDYLKNTYRMFKRVNARERIVEWYHIGPKLHKNDT
Sbjct: 1   MKVLDVSSSFTVPFNEDDKDNCFLAHDYLKNTYRMFKRVNARERIVEWYHIGPKLHKNDT 60

Query: 61  AFNEIMKRYCRNSVLVTSDMKPKDLGLPTEAYISVEVYEDGTSALKTFEHVTSETAAEEA 120
           AFNEIMKRYCRNSVLVTSDMKPKDLGLPTEAYISVEVYEDGTSALKTFEHVTSETAAEEA
Sbjct: 61  AFNEIMKRYCRNSVLVTSDMKPKDLGLPTEAYISVEVYEDGTSALKTFEHVTSETAAEEA 120

Query: 121 KEIGVKHLLQDIKDTTVGTLSQCITNQVLDLKGLNSKLLGTRSYLEKVATGKLSTNHQFI 180
           KEIGVKHLLQDIKDTTVGTLSQCITNQVLDLKGLNSKLLGTRSYLEKVATGKLSTNHQFI
Sbjct: 121 KEIGVKHLLQDIKDTTVGTLSQCITNQVLDLKGLNSKLLGTRSYLEKVATGKLSTNHQFI 180

Query: 181 YQLQVFKLLPVISL 194
           YQLQVFKLLPVISL
Sbjct: 181 YQLQVFKLLPVISL 194


>gi|169161813 PREDICTED: similar to hCG1644176 [Homo sapiens]
          Length = 194

 Score =  388 bits (997), Expect = e-108
 Identities = 193/194 (99%), Positives = 193/194 (99%)

Query: 1   MKVLDVSSSFTVPFNEDDKDNCFLAHDYLKNTYRMFKRVNARERIVEWYHIGPKLHKNDT 60
           MKVLDVSSSFTVPFNEDDKDNCFLAHDYLKNTYRMFKRVNARERIVEWYHIGPKLHKNDT
Sbjct: 1   MKVLDVSSSFTVPFNEDDKDNCFLAHDYLKNTYRMFKRVNARERIVEWYHIGPKLHKNDT 60

Query: 61  AFNEIMKRYCRNSVLVTSDMKPKDLGLPTEAYISVEVYEDGTSALKTFEHVTSETAAEEA 120
           AFNEIMKRYCRNSVLVTSDMKPKDLGLPTEAYISVEVYEDGTSALKTFEHVTSET AEEA
Sbjct: 61  AFNEIMKRYCRNSVLVTSDMKPKDLGLPTEAYISVEVYEDGTSALKTFEHVTSETGAEEA 120

Query: 121 KEIGVKHLLQDIKDTTVGTLSQCITNQVLDLKGLNSKLLGTRSYLEKVATGKLSTNHQFI 180
           KEIGVKHLLQDIKDTTVGTLSQCITNQVLDLKGLNSKLLGTRSYLEKVATGKLSTNHQFI
Sbjct: 121 KEIGVKHLLQDIKDTTVGTLSQCITNQVLDLKGLNSKLLGTRSYLEKVATGKLSTNHQFI 180

Query: 181 YQLQVFKLLPVISL 194
           YQLQVFKLLPVISL
Sbjct: 181 YQLQVFKLLPVISL 194


>gi|25777615 proteasome 26S non-ATPase subunit 7 [Homo sapiens]
          Length = 324

 Score =  290 bits (741), Expect = 7e-79
 Identities = 152/197 (77%), Positives = 166/197 (84%), Gaps = 4/197 (2%)

Query: 2   KVLDVSSSFTVPFNEDDKDNC--FLAHDYLKNTYRMFKRVNARERIVEWYHIGPKLHKND 59
           KVLDVS+SF VPF+EDDKD+   FL HDYL+N Y MFK+VNARERIV WYH GPKLHKND
Sbjct: 46  KVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKND 105

Query: 60  TAFNEIMKRYCRNSVLVTSDMKPKDLGLPTEAYISVE-VYEDGTSALKTFEHVTSETAAE 118
            A NE+MKRYC NSVLV  D+KPKDLGLPTEAYISVE V++DGT   KTFEHVTSE  AE
Sbjct: 106 IAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAE 165

Query: 119 EAKEIGVKHLLQDIKDTTVGTLSQCITNQVLDLKGLNSKLLGTRSYLEKVATGKLSTNHQ 178
           EA+E+GV+HLL+DIKDTTVGTLSQ ITNQV  LKGLNSKLL  RSYLEKVATGKL  NHQ
Sbjct: 166 EAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQ 225

Query: 179 FIYQLQ-VFKLLPVISL 194
            IYQLQ VF LLP +SL
Sbjct: 226 IIYQLQDVFNLLPDVSL 242


>gi|4503519 eukaryotic translation initiation factor 3, subunit 5
           epsilon, 47kDa [Homo sapiens]
          Length = 357

 Score = 58.5 bits (140), Expect = 3e-09
 Identities = 47/198 (23%), Positives = 99/198 (50%), Gaps = 17/198 (8%)

Query: 4   LDVSSSFTVPFNEDDKDNCFLAHDYLKNTYRMFKRVNARERIVEWYHIGPKLHKNDTAFN 63
           ++V++ F+VP NE + D   +  ++ KN Y + K+V+  E I+ WY  G  + ++    +
Sbjct: 129 VEVTNCFSVPHNESE-DEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIH 187

Query: 64  EIMKRYCRNSVLVTSDMKPKDLGLPTEAYISVEVYEDGTSALKTFEHVTSETAAEEAKEI 123
           E   R   N + +T D   ++  +  +AY+S  +   G +    F  +T + A  + + I
Sbjct: 188 EYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERI 247

Query: 124 GVKHLLQDI--KDTTVGTLSQCITNQVLDLKGLNSKLLGTRS----YLEKVATGKLSTNH 177
           GV  +++     +  +G     +++ +  + G ++++    S    Y E V +GK+S ++
Sbjct: 248 GVDLIMKTCFSPNRVIG-----LSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADN 302

Query: 178 ---QFIYQL--QVFKLLP 190
              +F+  L  QV K++P
Sbjct: 303 TVGRFLMSLVNQVPKIVP 320


>gi|34147637 COP9 signalosome subunit 6 [Homo sapiens]
          Length = 327

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 42/196 (21%), Positives = 85/196 (43%), Gaps = 11/196 (5%)

Query: 4   LDVSSSFTVPFNEDDKDNCFLAHDYLKNTYRMFKRVNARERIVEWYHIGPKLHKNDTAFN 63
           ++V +SF +  +   ++   +  +Y       FK+V      + WY  G     +D   +
Sbjct: 81  IEVMNSFEL-LSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVH 139

Query: 64  EIMKRYCRNSVLVTSDMKPKDLGLPTEAYISVEVYEDGTSALKTFEHVTSETAAEEAKEI 123
           + +     + + +  +   K   LP   + SV    +G + +  F  +T   A EEA+ I
Sbjct: 140 KQVCEIIESPLFLKLNPMTKHTDLPVSVFESVIDIINGEATM-LFAELTYTLATEEAERI 198

Query: 124 GVKHLLQDIKDTTVG-----TLSQCITNQVLDLKGLNSKLLGTRSYLEKVATGKLSTNHQ 178
           GV H+    + T  G     T+++ +  Q   +K L+S++     Y++    G++  NH+
Sbjct: 199 GVDHV---ARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHE 255

Query: 179 FIYQLQVF-KLLPVIS 193
            + +       LPV+S
Sbjct: 256 ILREAYALCHCLPVLS 271


>gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2
           [Homo sapiens]
          Length = 1481

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 15/58 (25%), Positives = 29/58 (50%)

Query: 79  DMKPKDLGLPTEAYISVEVYEDGTSALKTFEHVTSETAAEEAKEIGVKHLLQDIKDTT 136
           + K   + LP +   SVE  + G  + K    V  E +A + + + V HL  ++K+++
Sbjct: 419 ESKGSPVFLPRKENSSVEAKDSGLESKKLPRSVKLEKSAPDTELVNVTHLNTEVKNSS 476


>gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1
           [Homo sapiens]
          Length = 1490

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 15/58 (25%), Positives = 29/58 (50%)

Query: 79  DMKPKDLGLPTEAYISVEVYEDGTSALKTFEHVTSETAAEEAKEIGVKHLLQDIKDTT 136
           + K   + LP +   SVE  + G  + K    V  E +A + + + V HL  ++K+++
Sbjct: 419 ESKGSPVFLPRKENSSVEAKDSGLESKKLPRSVKLEKSAPDTELVNVTHLNTEVKNSS 476


>gi|57863255 zinc finger, SWIM domain containing 3 [Homo sapiens]
          Length = 696

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 54  KLHKNDT--AFNEIMKRYCRNSVLVTSDMKPKDLGLPTEAYISVEVY 98
           KLH++    +F  +MK   R +V VTS+   K+L   ++A +  +++
Sbjct: 317 KLHRSSANPSFKRLMKEALREAVFVTSEASLKNLCQMSQAVLDEDLF 363


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,384,315
Number of Sequences: 37866
Number of extensions: 243718
Number of successful extensions: 623
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 615
Number of HSP's gapped (non-prelim): 8
length of query: 194
length of database: 18,247,518
effective HSP length: 97
effective length of query: 97
effective length of database: 14,574,516
effective search space: 1413728052
effective search space used: 1413728052
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.