Search of human proteins with 168480086

Search of human proteins with 168480086

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|168480086 hypothetical protein LOC339453 [Homo sapiens]
         (173 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|168480086 hypothetical protein LOC339453 [Homo sapiens]            374   e-104
gi|239757595 PREDICTED: hypothetical protein [Homo sapiens]            37   0.009
gi|71834872 tumor differentially expressed 2-like [Homo sapiens]       28   3.0  
gi|154759247 testis/prostate/placenta-expressed protein isoform ...    27   6.7  
gi|154759245 testis/prostate/placenta-expressed protein isoform ...    27   6.7  

>gi|168480086 hypothetical protein LOC339453 [Homo sapiens]
          Length = 173

 Score =  374 bits (959), Expect = e-104
 Identities = 173/173 (100%), Positives = 173/173 (100%)

Query: 1   MSMSANTMIFMILGASVVMAIACLMDMNALLDRFHNYILPHLRGEDRVCHCNCGRHHIHY 60
           MSMSANTMIFMILGASVVMAIACLMDMNALLDRFHNYILPHLRGEDRVCHCNCGRHHIHY
Sbjct: 1   MSMSANTMIFMILGASVVMAIACLMDMNALLDRFHNYILPHLRGEDRVCHCNCGRHHIHY 60

Query: 61  VIPYDGDQSVVDASENYFVTDSVTKQEIDLMLGLLLGFCISWFLVWMDGVLHCAVRAWRA 120
           VIPYDGDQSVVDASENYFVTDSVTKQEIDLMLGLLLGFCISWFLVWMDGVLHCAVRAWRA
Sbjct: 61  VIPYDGDQSVVDASENYFVTDSVTKQEIDLMLGLLLGFCISWFLVWMDGVLHCAVRAWRA 120

Query: 121 GRRYDGSWTWLPKLCSLRELGRRPHRPFEEAAGNMVHVKQKLYHNGHPSPRHL 173
           GRRYDGSWTWLPKLCSLRELGRRPHRPFEEAAGNMVHVKQKLYHNGHPSPRHL
Sbjct: 121 GRRYDGSWTWLPKLCSLRELGRRPHRPFEEAAGNMVHVKQKLYHNGHPSPRHL 173


>gi|239757595 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 612

 Score = 37.0 bits (84), Expect = 0.009
 Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 5/88 (5%)

Query: 78  FVTDSVTKQEIDLMLGLLLGFCISWFLVWMDGVLHCAVR-----AWRAGRRYDGSWTWLP 132
           F  DS   Q+  + LGLLLG  +  FL     +  C  R       R   R+        
Sbjct: 353 FTRDSAAPQKKSIALGLLLGVVVRGFLATRGELAGCEPRQELQLCSREACRWQNPTYRQS 412

Query: 133 KLCSLRELGRRPHRPFEEAAGNMVHVKQ 160
             CS + +G RP RP+   A   VH  Q
Sbjct: 413 CFCSAQRVGPRPLRPYATLAVEPVHCGQ 440


>gi|71834872 tumor differentially expressed 2-like [Homo sapiens]
          Length = 455

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 90  LMLGLLLGFCISWFLVWMDGVLHCAVRAWRAG 121
           + L LL+ F  SW   W+     C  RAW AG
Sbjct: 173 IQLVLLIDFAHSWNQRWLGKAEECDSRAWYAG 204


>gi|154759247 testis/prostate/placenta-expressed protein isoform 1
           [Homo sapiens]
          Length = 298

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 147 PFEEAAGNMVHVKQKLYHNGHPSPRHL 173
           P E     +  VKQ+LYH   P+ RH+
Sbjct: 81  PMERQRNQLAGVKQQLYHPALPTLRHM 107


>gi|154759245 testis/prostate/placenta-expressed protein isoform 2
           [Homo sapiens]
          Length = 271

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 147 PFEEAAGNMVHVKQKLYHNGHPSPRHL 173
           P E     +  VKQ+LYH   P+ RH+
Sbjct: 81  PMERQRNQLAGVKQQLYHPALPTLRHM 107


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.329    0.141    0.481 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,162,948
Number of Sequences: 37866
Number of extensions: 311207
Number of successful extensions: 747
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 742
Number of HSP's gapped (non-prelim): 5
length of query: 173
length of database: 18,247,518
effective HSP length: 95
effective length of query: 78
effective length of database: 14,650,248
effective search space: 1142719344
effective search space used: 1142719344
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.