Search of human proteins with 110815802

Search of human proteins with 110815802

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|110815802 hypothetical protein LOC84267 [Homo sapiens]
         (341 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|110815802 hypothetical protein LOC84267 [Homo sapiens]             694   0.0  
gi|239751058 PREDICTED: hypothetical protein XP_002347690 [Homo ...    29   5.3  
gi|94421471 ring finger protein 17 [Homo sapiens]                      29   5.3  
gi|209977117 unc-5 homolog D [Homo sapiens]                            28   9.1  

>gi|110815802 hypothetical protein LOC84267 [Homo sapiens]
          Length = 341

 Score =  694 bits (1792), Expect = 0.0
 Identities = 341/341 (100%), Positives = 341/341 (100%)

Query: 1   MDGLLNPRESSKFIAENSRDVFIDSGGVRRVAELLLAKAAGPELRVEGWKALHELNPRAA 60
           MDGLLNPRESSKFIAENSRDVFIDSGGVRRVAELLLAKAAGPELRVEGWKALHELNPRAA
Sbjct: 1   MDGLLNPRESSKFIAENSRDVFIDSGGVRRVAELLLAKAAGPELRVEGWKALHELNPRAA 60

Query: 61  DEAAVNWVFVTDTLNFSFWSEQDEHKCVVRYRGKTYSGYWSLCAAVNRALDEGIPITSAS 120
           DEAAVNWVFVTDTLNFSFWSEQDEHKCVVRYRGKTYSGYWSLCAAVNRALDEGIPITSAS
Sbjct: 61  DEAAVNWVFVTDTLNFSFWSEQDEHKCVVRYRGKTYSGYWSLCAAVNRALDEGIPITSAS 120

Query: 121 YYATVTLDQVRNILRSDTDVSMPLVEERHRILNETGKILLEKFGGSFLNCVRESENSAQK 180
           YYATVTLDQVRNILRSDTDVSMPLVEERHRILNETGKILLEKFGGSFLNCVRESENSAQK
Sbjct: 121 YYATVTLDQVRNILRSDTDVSMPLVEERHRILNETGKILLEKFGGSFLNCVRESENSAQK 180

Query: 181 LMHLVVESFPSYRDVTLFEGKRVSFYKRAQILVADTWSVLEGKGDGCFKDISSITMFADY 240
           LMHLVVESFPSYRDVTLFEGKRVSFYKRAQILVADTWSVLEGKGDGCFKDISSITMFADY
Sbjct: 181 LMHLVVESFPSYRDVTLFEGKRVSFYKRAQILVADTWSVLEGKGDGCFKDISSITMFADY 240

Query: 241 RLPQVLAHLGALKYSDDLLKKLLKGEMLSYGDRQEVEIRGCSLWCVELIRDCLLELIEQK 300
           RLPQVLAHLGALKYSDDLLKKLLKGEMLSYGDRQEVEIRGCSLWCVELIRDCLLELIEQK
Sbjct: 241 RLPQVLAHLGALKYSDDLLKKLLKGEMLSYGDRQEVEIRGCSLWCVELIRDCLLELIEQK 300

Query: 301 GEKPNGEINSILLDYYLWDYAHDHREDMKGIPFHRIRCIYY 341
           GEKPNGEINSILLDYYLWDYAHDHREDMKGIPFHRIRCIYY
Sbjct: 301 GEKPNGEINSILLDYYLWDYAHDHREDMKGIPFHRIRCIYY 341


>gi|239751058 PREDICTED: hypothetical protein XP_002347690 [Homo
           sapiens]
          Length = 462

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 7/76 (9%)

Query: 71  TDTLNFSFWSEQDEHKCVVRYR-GKTYSGYWSLCAAVNRALDEGIPITSASYYATVTLDQ 129
           T  LNFS   E++ H  + RY+ G   +G W   A VN      +P+ S +++  V L+Q
Sbjct: 184 TKYLNFSESEEKESHVAMHRYQAGGGDAGDW---AGVNNLGQRDLPV-SINFWVPVELNQ 239

Query: 130 VRNILRSDTDVSMPLV 145
               +  D +VS P V
Sbjct: 240 --EAVWMDVEVSHPQV 253


>gi|94421471 ring finger protein 17 [Homo sapiens]
          Length = 1623

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 14/78 (17%)

Query: 228  FKDISSITMFADY---------RLPQVLAHLGALKYSDDLLKKLLKGEMLSYGDRQEVEI 278
            F  +S +  F DY         RL Q+ +HL  ++Y    +K LL G      D  E  I
Sbjct: 1506 FNPLSILVQFVDYGSTAKLTLNRLCQIPSHL--MRYPARAIKVLLAGFKPPLRDLGETRI 1563

Query: 279  RGCSLWCVELI---RDCL 293
              C  W +E +    DCL
Sbjct: 1564 PYCPKWSMEALWAMIDCL 1581


>gi|209977117 unc-5 homolog D [Homo sapiens]
          Length = 953

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 11/72 (15%)

Query: 41  GPELRVEGWKALHELNPRAADEAAVNWVFVTDTLNFSFWSEQDE-------HKCVVRYRG 93
           G E+ +EG   LH   P     A V W+   + ++    SEQDE       H  ++R   
Sbjct: 167 GREVPIEGMIVLHCRPPEGVPAAEVEWLKNEEPID----SEQDENIDTRADHNLIIRQAR 222

Query: 94  KTYSGYWSLCAA 105
            + SG ++  AA
Sbjct: 223 LSDSGNYTCMAA 234


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,481,773
Number of Sequences: 37866
Number of extensions: 521569
Number of successful extensions: 1016
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1015
Number of HSP's gapped (non-prelim): 4
length of query: 341
length of database: 18,247,518
effective HSP length: 103
effective length of query: 238
effective length of database: 14,347,320
effective search space: 3414662160
effective search space used: 3414662160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.