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Search of human proteins with 156142176
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|156142176 hypothetical protein LOC29090 [Homo sapiens]
(248 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|156142176 hypothetical protein LOC29090 [Homo sapiens] 503 e-143
gi|94538350 protocadherin 17 precursor [Homo sapiens] 32 0.39
gi|208431774 phosphatidylinositol-4-phosphate 5-kinase, type I, ... 32 0.67
gi|56237029 integrin alpha 5 precursor [Homo sapiens] 30 2.5
gi|193788722 hypothetical protein LOC51507 [Homo sapiens] 30 2.5
gi|156142178 coiled-coil domain containing 59 [Homo sapiens] 29 3.3
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 28 5.7
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 28 5.7
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 28 5.7
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 28 5.7
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 28 5.7
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote... 28 5.7
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 28 5.7
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 28 5.7
gi|169165661 PREDICTED: hypothetical protein isoform 2 [Homo sap... 28 9.7
gi|169166004 PREDICTED: hypothetical protein isoform 2 [Homo sap... 28 9.7
gi|169165205 PREDICTED: hypothetical protein isoform 2 [Homo sap... 28 9.7
>gi|156142176 hypothetical protein LOC29090 [Homo sapiens]
Length = 248
Score = 503 bits (1296), Expect = e-143
Identities = 248/248 (100%), Positives = 248/248 (100%)
Query: 1 MICTFLRAVQYTEKLHRSSAKRLLLPYIVLNKACLKTEPSLRCGLQYQKKTLRPRCILGV 60
MICTFLRAVQYTEKLHRSSAKRLLLPYIVLNKACLKTEPSLRCGLQYQKKTLRPRCILGV
Sbjct: 1 MICTFLRAVQYTEKLHRSSAKRLLLPYIVLNKACLKTEPSLRCGLQYQKKTLRPRCILGV 60
Query: 61 TQKTIWTQGPSPRKAKEDGSKQVSVHRSQRGGTAVPTSQKVKEAGRDFTYLIVVLFGISI 120
TQKTIWTQGPSPRKAKEDGSKQVSVHRSQRGGTAVPTSQKVKEAGRDFTYLIVVLFGISI
Sbjct: 61 TQKTIWTQGPSPRKAKEDGSKQVSVHRSQRGGTAVPTSQKVKEAGRDFTYLIVVLFGISI 120
Query: 121 TGGLFYTIFKELFSSSSPSKIYGRALEKCRSHPEVIGVFGESVKGYGEVTRRGRRQHVRF 180
TGGLFYTIFKELFSSSSPSKIYGRALEKCRSHPEVIGVFGESVKGYGEVTRRGRRQHVRF
Sbjct: 121 TGGLFYTIFKELFSSSSPSKIYGRALEKCRSHPEVIGVFGESVKGYGEVTRRGRRQHVRF 180
Query: 181 TEYVKDGLKHTCVKFYIEGSEPGKQGTVYAQVKENPGSGEYDFRYIFVEIESYPRRTIII 240
TEYVKDGLKHTCVKFYIEGSEPGKQGTVYAQVKENPGSGEYDFRYIFVEIESYPRRTIII
Sbjct: 181 TEYVKDGLKHTCVKFYIEGSEPGKQGTVYAQVKENPGSGEYDFRYIFVEIESYPRRTIII 240
Query: 241 EDNRSQDD 248
EDNRSQDD
Sbjct: 241 EDNRSQDD 248
>gi|94538350 protocadherin 17 precursor [Homo sapiens]
Length = 1159
Score = 32.3 bits (72), Expect = 0.39
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 157 GVFGESVKGYGEVTRRGRRQHVRFTEYVKDGLKHTCVKFYIEGSEPGKQGTVYAQVK--- 213
G+FG VK G+ T+ + + + HT V ++G EP + TV VK
Sbjct: 177 GLFGLDVKSRGDGTKFPELVIQKALDREQQN-HHTLVLTALDGGEPPRSATVQINVKVID 235
Query: 214 ENPGSGEYDFRYIFVEI-ESYPRRTIIIEDNRSQDD 248
N S ++ VE+ E+ P T++I+ N + D
Sbjct: 236 SNDNSPVFEAPSYLVELPENAPLGTVVIDLNATDAD 271
>gi|208431774 phosphatidylinositol-4-phosphate 5-kinase, type I,
alpha isoform 3 [Homo sapiens]
Length = 522
Score = 31.6 bits (70), Expect = 0.67
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 61 TQKTIWTQGPSPRKAKEDGSKQVSVHRSQRGGTAVPTSQKVKEAGRDFTYLIVVLFGISI 120
TQ ++ T+ P+P+KA + + ++RGGT Q VK+ + L+ +S+
Sbjct: 332 TQYSVDTRRPAPQKALYSTAMESIQGEARRGGTMETDDQFVKKLEHSWKALVHDGDTVSV 391
Query: 121 TGGLFY----------TIFKELFSSSSPSK 140
FY T+FK++ SPSK
Sbjct: 392 HRPGFYAERFQRFMCNTVFKKIPLKPSPSK 421
>gi|56237029 integrin alpha 5 precursor [Homo sapiens]
Length = 1049
Score = 29.6 bits (65), Expect = 2.5
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 111 LIVVLFGISITGGLFYTIFK-ELFSSSSPSKIYGRALEKCRSHP 153
++ +LFG+ + G L Y ++K F S P YG A+EK + P
Sbjct: 1003 ILAILFGLLLLGLLIYILYKLGFFKRSLP---YGTAMEKAQLKP 1043
>gi|193788722 hypothetical protein LOC51507 [Homo sapiens]
Length = 306
Score = 29.6 bits (65), Expect = 2.5
Identities = 14/63 (22%), Positives = 29/63 (46%)
Query: 42 RCGLQYQKKTLRPRCILGVTQKTIWTQGPSPRKAKEDGSKQVSVHRSQRGGTAVPTSQKV 101
R + +KKT +P+ V++ + + P P K K ++ S+ ++ P S +
Sbjct: 190 RLRAKLEKKTKKPKAAESVSKPDVSEEAPGPSKVKTGKPEEASLDSREKKTNLAPKSTAM 249
Query: 102 KEA 104
E+
Sbjct: 250 NES 252
>gi|156142178 coiled-coil domain containing 59 [Homo sapiens]
Length = 241
Score = 29.3 bits (64), Expect = 3.3
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 5 FLRAVQYTEKLHRSSAKRLLLPYIVLNKACLKTEPSLRCGLQYQKKTLRPRC 56
F R Q E+ R K+ + + +LNK K +P+L ++Y + ++ +C
Sbjct: 190 FERRKQEREEAQRQYKKKKMEVFKILNKKTKKGQPNLNVQMEYLLQKIQEKC 241
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 28.5 bits (62), Expect = 5.7
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 52 LRPRCILGVTQ--KTIWTQGPSPRKAKEDGSKQVSVHRSQRGGTAVPTSQKVKEAGRDFT 109
++ + +LGV + K T+ PSP K K D S + S RS+ G +S+ K+ GRD T
Sbjct: 6 VKKKSLLGVKENNKKSSTRAPSPTKRK-DRSDEKSKDRSKDKGATKESSE--KDRGRDKT 62
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 28.5 bits (62), Expect = 5.7
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 52 LRPRCILGVTQ--KTIWTQGPSPRKAKEDGSKQVSVHRSQRGGTAVPTSQKVKEAGRDFT 109
++ + +LGV + K T+ PSP K K D S + S RS+ G +S+ K+ GRD T
Sbjct: 6 VKKKSLLGVKENNKKSSTRAPSPTKRK-DRSDEKSKDRSKDKGATKESSE--KDRGRDKT 62
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 28.5 bits (62), Expect = 5.7
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 52 LRPRCILGVTQ--KTIWTQGPSPRKAKEDGSKQVSVHRSQRGGTAVPTSQKVKEAGRDFT 109
++ + +LGV + K T+ PSP K K D S + S RS+ G +S+ K+ GRD T
Sbjct: 6 VKKKSLLGVKENNKKSSTRAPSPTKRK-DRSDEKSKDRSKDKGATKESSE--KDRGRDKT 62
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 28.5 bits (62), Expect = 5.7
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 52 LRPRCILGVTQ--KTIWTQGPSPRKAKEDGSKQVSVHRSQRGGTAVPTSQKVKEAGRDFT 109
++ + +LGV + K T+ PSP K K D S + S RS+ G +S+ K+ GRD T
Sbjct: 6 VKKKSLLGVKENNKKSSTRAPSPTKRK-DRSDEKSKDRSKDKGATKESSE--KDRGRDKT 62
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 28.5 bits (62), Expect = 5.7
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 52 LRPRCILGVTQ--KTIWTQGPSPRKAKEDGSKQVSVHRSQRGGTAVPTSQKVKEAGRDFT 109
++ + +LGV + K T+ PSP K K D S + S RS+ G +S+ K+ GRD T
Sbjct: 6 VKKKSLLGVKENNKKSSTRAPSPTKRK-DRSDEKSKDRSKDKGATKESSE--KDRGRDKT 62
>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 3 [Homo sapiens]
Length = 305
Score = 28.5 bits (62), Expect = 5.7
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 52 LRPRCILGVTQ--KTIWTQGPSPRKAKEDGSKQVSVHRSQRGGTAVPTSQKVKEAGRDFT 109
++ + +LGV + K T+ PSP K K D S + S RS+ G +S+ K+ GRD T
Sbjct: 6 VKKKSLLGVKENNKKSSTRAPSPTKRK-DRSDEKSKDRSKDKGATKESSE--KDRGRDKT 62
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 28.5 bits (62), Expect = 5.7
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 52 LRPRCILGVTQ--KTIWTQGPSPRKAKEDGSKQVSVHRSQRGGTAVPTSQKVKEAGRDFT 109
++ + +LGV + K T+ PSP K K D S + S RS+ G +S+ K+ GRD T
Sbjct: 6 VKKKSLLGVKENNKKSSTRAPSPTKRK-DRSDEKSKDRSKDKGATKESSE--KDRGRDKT 62
>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 28.5 bits (62), Expect = 5.7
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 52 LRPRCILGVTQ--KTIWTQGPSPRKAKEDGSKQVSVHRSQRGGTAVPTSQKVKEAGRDFT 109
++ + +LGV + K T+ PSP K K D S + S RS+ G +S+ K+ GRD T
Sbjct: 6 VKKKSLLGVKENNKKSSTRAPSPTKRK-DRSDEKSKDRSKDKGATKESSE--KDRGRDKT 62
>gi|169165661 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 167
Score = 27.7 bits (60), Expect = 9.7
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 146 LEKCRSHPEVIGVFGES-------VKGYGEVTRRGRRQHVRFTEYVK 185
L C S P I V ES VKG G + RR H R Y+K
Sbjct: 86 LAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQRRRLHFRLPRYIK 132
>gi|169166004 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 167
Score = 27.7 bits (60), Expect = 9.7
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 146 LEKCRSHPEVIGVFGES-------VKGYGEVTRRGRRQHVRFTEYVK 185
L C S P I V ES VKG G + RR H R Y+K
Sbjct: 86 LAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQRRRLHFRLPRYIK 132
>gi|169165205 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 167
Score = 27.7 bits (60), Expect = 9.7
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 146 LEKCRSHPEVIGVFGES-------VKGYGEVTRRGRRQHVRFTEYVK 185
L C S P I V ES VKG G + RR H R Y+K
Sbjct: 86 LAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQRRRLHFRLPRYIK 132
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,909,903
Number of Sequences: 37866
Number of extensions: 439859
Number of successful extensions: 928
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 925
Number of HSP's gapped (non-prelim): 17
length of query: 248
length of database: 18,247,518
effective HSP length: 100
effective length of query: 148
effective length of database: 14,460,918
effective search space: 2140215864
effective search space used: 2140215864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.