Search of human proteins with 155029535

Search of human proteins with 155029535

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|155029535 membrane-spanning 4-domains, subfamily A, member
13 isoform 2 [Homo sapiens]
         (112 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|155029535 membrane-spanning 4-domains, subfamily A, member 13...   231   9e-62
gi|155029533 membrane-spanning 4-domains, subfamily A, member 13...   211   8e-56
gi|27734859 ring finger protein 175 [Homo sapiens]                     31   0.19 
gi|17158035 tectorin beta [Homo sapiens]                               30   0.41 

>gi|155029535 membrane-spanning 4-domains, subfamily A, member 13
           isoform 2 [Homo sapiens]
          Length = 112

 Score =  231 bits (589), Expect = 9e-62
 Identities = 112/112 (100%), Positives = 112/112 (100%)

Query: 1   MIGIFHIFMWYFLLVLYMGQIKGAFGTYEPVTYKTGCTLWGIFFIIAGVFLIRVTKYPTR 60
           MIGIFHIFMWYFLLVLYMGQIKGAFGTYEPVTYKTGCTLWGIFFIIAGVFLIRVTKYPTR
Sbjct: 1   MIGIFHIFMWYFLLVLYMGQIKGAFGTYEPVTYKTGCTLWGIFFIIAGVFLIRVTKYPTR 60

Query: 61  SGKLGREVSRILLFFYGLEFSIALTHSIYSCSNLFRRQNDLTSVTEEAESTP 112
           SGKLGREVSRILLFFYGLEFSIALTHSIYSCSNLFRRQNDLTSVTEEAESTP
Sbjct: 61  SGKLGREVSRILLFFYGLEFSIALTHSIYSCSNLFRRQNDLTSVTEEAESTP 112


>gi|155029533 membrane-spanning 4-domains, subfamily A, member 13
           isoform 1 [Homo sapiens]
          Length = 152

 Score =  211 bits (538), Expect = 8e-56
 Identities = 112/152 (73%), Positives = 112/152 (73%), Gaps = 40/152 (26%)

Query: 1   MIGIFHIFMWYFLLVLYMGQIKGAFGTYEPVTYKTGCTLWGIFFIIAGVFLIRVTKYPTR 60
           MIGIFHIFMWYFLLVLYMGQIKGAFGTYEPVTYKTGCTLWGIFFIIAGVFLIRVTKYPTR
Sbjct: 1   MIGIFHIFMWYFLLVLYMGQIKGAFGTYEPVTYKTGCTLWGIFFIIAGVFLIRVTKYPTR 60

Query: 61  SG----------------------------------------KLGREVSRILLFFYGLEF 80
           SG                                        KLGREVSRILLFFYGLEF
Sbjct: 61  SGIISTLIINIICIITTITAVTLTIIELSHFNSVSYRNYGQAKLGREVSRILLFFYGLEF 120

Query: 81  SIALTHSIYSCSNLFRRQNDLTSVTEEAESTP 112
           SIALTHSIYSCSNLFRRQNDLTSVTEEAESTP
Sbjct: 121 SIALTHSIYSCSNLFRRQNDLTSVTEEAESTP 152


>gi|27734859 ring finger protein 175 [Homo sapiens]
          Length = 328

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 38  TLWGIFFIIAGVFLIRVTKYPTRSGKLGREVSRILLFFYGLEFSIAL 84
           ++WG+F +I    L R T+ P  SG+  R V +  L  Y L ++  +
Sbjct: 107 SMWGMFSVITSYILFRATRKPL-SGRTPRLVYKWFLLIYKLSYAFGV 152


>gi|17158035 tectorin beta [Homo sapiens]
          Length = 329

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 29  EPVTYKTGCTLWGIFFIIAGVFLIRVTKYPTRSGKLGREVSRILLFFY-GLEFSI 82
           +PV Y   CT    + +    F  RV     ++G +G   S++ L FY   +FSI
Sbjct: 113 QPVNYSFSCTYHSTYLVNQAAFDQRVATVHVKNGSMGTFESQLSLNFYTNAKFSI 167


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.331    0.145    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,623,752
Number of Sequences: 37866
Number of extensions: 124250
Number of successful extensions: 283
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 5
length of query: 112
length of database: 18,247,518
effective HSP length: 82
effective length of query: 30
effective length of database: 15,142,506
effective search space: 454275180
effective search space used: 454275180
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.