Search of human proteins with 153251878

Search of human proteins with 153251878

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|153251878 AP20 region protein isoform B [Homo sapiens]
         (170 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|153251878 AP20 region protein isoform B [Homo sapiens]             350   3e-97
gi|30350214 AP20 region protein isoform E [Homo sapiens]              160   5e-40
gi|31543559 radial spoke 3 homolog [Homo sapiens]                      32   0.34 
gi|4505997 protein phosphatase 1D [Homo sapiens]                       31   0.45 
gi|239508698 PREDICTED: similar to mucin [Homo sapiens]                29   1.7  
gi|62821796 hypothetical protein LOC154288 [Homo sapiens]              29   1.7  
gi|168823435 hypothetical protein LOC79747 [Homo sapiens]              29   2.2  

>gi|153251878 AP20 region protein isoform B [Homo sapiens]
          Length = 170

 Score =  350 bits (899), Expect = 3e-97
 Identities = 170/170 (100%), Positives = 170/170 (100%)

Query: 1   MKTMATRKRCKLSRTGPEFENVIKRLLCARTFHTRIGGDLTHGIINRGRRANAEQMGLQG 60
           MKTMATRKRCKLSRTGPEFENVIKRLLCARTFHTRIGGDLTHGIINRGRRANAEQMGLQG
Sbjct: 1   MKTMATRKRCKLSRTGPEFENVIKRLLCARTFHTRIGGDLTHGIINRGRRANAEQMGLQG 60

Query: 61  SAQHFNIFPLDLWTQGKKTEVQKREGTDSIPAAGRSGTANQPSIAPHRCLFSRGITALDG 120
           SAQHFNIFPLDLWTQGKKTEVQKREGTDSIPAAGRSGTANQPSIAPHRCLFSRGITALDG
Sbjct: 61  SAQHFNIFPLDLWTQGKKTEVQKREGTDSIPAAGRSGTANQPSIAPHRCLFSRGITALDG 120

Query: 121 LKRGRGCNGAAHLVRGDAWKTKLGEPWVSIALALAGPGAILILELSWFLG 170
           LKRGRGCNGAAHLVRGDAWKTKLGEPWVSIALALAGPGAILILELSWFLG
Sbjct: 121 LKRGRGCNGAAHLVRGDAWKTKLGEPWVSIALALAGPGAILILELSWFLG 170


>gi|30350214 AP20 region protein isoform E [Homo sapiens]
          Length = 119

 Score =  160 bits (405), Expect = 5e-40
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1  MKTMATRKRCKLSRTGPEFENVIKRLLCARTFHTRIGGDLTHGIINRGRRANAEQMGLQG 60
          MKTMATRKRCKLSRTGPEFENVIKRLLCARTFHTRIGGDLTHGIINRGRRANAEQMGLQG
Sbjct: 1  MKTMATRKRCKLSRTGPEFENVIKRLLCARTFHTRIGGDLTHGIINRGRRANAEQMGLQG 60

Query: 61 SAQHFNIFPLDLWTQG 76
          SAQHFNIFPLDLWTQG
Sbjct: 61 SAQHFNIFPLDLWTQG 76


>gi|31543559 radial spoke 3 homolog [Homo sapiens]
          Length = 560

 Score = 31.6 bits (70), Expect = 0.34
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 87  TDSIPAAGRSGTANQPSIAPHRC 109
           TD+ PAAG  G  ++PSIAP  C
Sbjct: 65  TDAAPAAGLCGAGSEPSIAPTSC 87


>gi|4505997 protein phosphatase 1D [Homo sapiens]
          Length = 605

 Score = 31.2 bits (69), Expect = 0.45
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 7/64 (10%)

Query: 76  GKKTEVQKREGTDSIPAAGRSGTANQPSIAPHRCLFSRGITALDGLKRGRGCNGAAHLVR 135
           GK   V  RE  D +P AG S        AP RC   R   A   +  G G   AA   R
Sbjct: 65  GKGPAVAAREARDPLPDAGASP-------APSRCCRRRSSVAFFAVCDGHGGREAAQFAR 117

Query: 136 GDAW 139
              W
Sbjct: 118 EHLW 121


>gi|239508698 PREDICTED: similar to mucin [Homo sapiens]
          Length = 265

 Score = 29.3 bits (64), Expect = 1.7
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 47  RGRRAN--AEQMGLQGSAQHFNIFPLDLWTQGKKTEVQKREGTDSIPAAG---RSGTANQ 101
           RG R++  A+Q G Q   +     P+   ++G +TE +KR+     PAAG   R G+ + 
Sbjct: 175 RGSRSSPSADQQGAQDREEEAAAAPVPT-SRGHRTEKRKRQQPQCRPAAGTGQRRGSRSS 233

Query: 102 PSIAPHR 108
           PS    R
Sbjct: 234 PSADQQR 240


>gi|62821796 hypothetical protein LOC154288 [Homo sapiens]
          Length = 217

 Score = 29.3 bits (64), Expect = 1.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 71  DLWTQGKKTEVQKREGTDSIPAAGRSGTANQPSIA 105
           ++ TQG   EVQ+     S+ AA +SGT   P  A
Sbjct: 164 EVGTQGSPVEVQEAGTQQSLQAANKSGTQRSPEAA 198


>gi|168823435 hypothetical protein LOC79747 [Homo sapiens]
          Length = 1667

 Score = 28.9 bits (63), Expect = 2.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 61  SAQHFNIFPLDLWTQGKKTEVQK 83
           +AQHF +F L LW   KK ++ K
Sbjct: 835 TAQHFRVFHLSLWRLMKKVQITK 857


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,703,408
Number of Sequences: 37866
Number of extensions: 278678
Number of successful extensions: 544
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 539
Number of HSP's gapped (non-prelim): 7
length of query: 170
length of database: 18,247,518
effective HSP length: 95
effective length of query: 75
effective length of database: 14,650,248
effective search space: 1098768600
effective search space used: 1098768600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.