BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|110227857 thiamin pyrophosphokinase 1 isoform b [Homo sapiens] (194 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|110227857 thiamin pyrophosphokinase 1 isoform b [Homo sapiens] 410 e-115 gi|21362110 thiamin pyrophosphokinase 1 isoform a [Homo sapiens] 387 e-108 gi|31657119 carboxypeptidase 2, cytosolic [Homo sapiens] 32 0.26 gi|239751058 PREDICTED: hypothetical protein XP_002347690 [Homo ... 30 1.3 gi|5454002 putative c-Myc-responsive isoform 1 [Homo sapiens] 29 2.2 gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 29 2.9 gi|239735590 TRAF2 and NCK interacting kinase isoform 7 [Homo sa... 28 3.7 gi|239735586 TRAF2 and NCK interacting kinase isoform 5 [Homo sa... 28 3.7 gi|239735582 TRAF2 and NCK interacting kinase isoform 3 [Homo sa... 28 3.7 gi|55741807 TRAF2 and NCK interacting kinase isoform 1 [Homo sap... 28 3.7 gi|224586853 sorbin and SH3 domain containing 2 isoform 7 [Homo ... 28 6.4 gi|10947118 sorbin and SH3 domain containing 2 isoform 2 [Homo s... 28 6.4 >gi|110227857 thiamin pyrophosphokinase 1 isoform b [Homo sapiens] Length = 194 Score = 410 bits (1053), Expect = e-115 Identities = 194/194 (100%), Positives = 194/194 (100%) Query: 1 MEHAFTPLEPLLSTGNLKYCLVILNQPLDNYFRHLWNKALLRACADGGANRLYDITEGER 60 MEHAFTPLEPLLSTGNLKYCLVILNQPLDNYFRHLWNKALLRACADGGANRLYDITEGER Sbjct: 1 MEHAFTPLEPLLSTGNLKYCLVILNQPLDNYFRHLWNKALLRACADGGANRLYDITEGER 60 Query: 61 ESFLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKMLQKKIEEKDLKGK 120 ESFLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKMLQKKIEEKDLKGK Sbjct: 61 ESFLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKMLQKKIEEKDLKGK 120 Query: 121 HRLHVDTGMEGDWCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYDGSGVVTV 180 HRLHVDTGMEGDWCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYDGSGVVTV Sbjct: 121 HRLHVDTGMEGDWCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYDGSGVVTV 180 Query: 181 ETDHPLLWTMAIKS 194 ETDHPLLWTMAIKS Sbjct: 181 ETDHPLLWTMAIKS 194 >gi|21362110 thiamin pyrophosphokinase 1 isoform a [Homo sapiens] Length = 243 Score = 387 bits (993), Expect = e-108 Identities = 194/243 (79%), Positives = 194/243 (79%), Gaps = 49/243 (20%) Query: 1 MEHAFTPLEPLLSTGNLKYCLVILNQPLDNYFRHLWNKALLRACADGGANRLYDITEGER 60 MEHAFTPLEPLLSTGNLKYCLVILNQPLDNYFRHLWNKALLRACADGGANRLYDITEGER Sbjct: 1 MEHAFTPLEPLLSTGNLKYCLVILNQPLDNYFRHLWNKALLRACADGGANRLYDITEGER 60 Query: 61 ESFLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKMLQKKIEEKDLK-- 118 ESFLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKMLQKKIEEKDLK Sbjct: 61 ESFLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKMLQKKIEEKDLKVD 120 Query: 119 -----------------------------------------------GKHRLHVDTGMEG 131 GKHRLHVDTGMEG Sbjct: 121 VIVTLGGLAGRFDQIMASVNTLFQATHITPFPIIIIQEESLIYLLQPGKHRLHVDTGMEG 180 Query: 132 DWCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYDGSGVVTVETDHPLLWTMA 191 DWCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYDGSGVVTVETDHPLLWTMA Sbjct: 181 DWCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYDGSGVVTVETDHPLLWTMA 240 Query: 192 IKS 194 IKS Sbjct: 241 IKS 243 >gi|31657119 carboxypeptidase 2, cytosolic [Homo sapiens] Length = 902 Score = 32.3 bits (72), Expect = 0.26 Identities = 15/44 (34%), Positives = 23/44 (52%) Query: 90 LISTPDQDHTDFTKCLKMLQKKIEEKDLKGKHRLHVDTGMEGDW 133 L+ D D FT+CL L++ + ++ K H L D +EG W Sbjct: 662 LLDFCDPDQMKFTQCLAELKELLRQEIHKKFHELGQDVDLEGSW 705 >gi|239751058 PREDICTED: hypothetical protein XP_002347690 [Homo sapiens] Length = 462 Score = 30.0 bits (66), Expect = 1.3 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 91 ISTPDQDHTDFTKCLKMLQKKIEEKDLKGKHRLHVDTGMEGDWCGLIPVGQPCMQVT 147 + T H FTK L + + +E + HR G GDW G+ +GQ + V+ Sbjct: 173 VYTVVSSHEQFTKYLNFSESEEKESHV-AMHRYQAGGGDAGDWAGVNNLGQRDLPVS 228 >gi|5454002 putative c-Myc-responsive isoform 1 [Homo sapiens] Length = 174 Score = 29.3 bits (64), Expect = 2.2 Identities = 12/33 (36%), Positives = 19/33 (57%) Query: 39 ALLRACADGGANRLYDITEGERESFLPEFINGD 71 A++R ADG +++D EGE E+ L + D Sbjct: 129 AMIRGAADGSRFQVWDYEEGEVEALLDRYFEAD 161 >gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with transmembrane signal), 1 [Homo sapiens] Length = 3259 Score = 28.9 bits (63), Expect = 2.9 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 57 EGERESFLPEFIN--GDFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKMLQKKIEE 114 + +R+ L E N + I E+ E + K Q++ D TK +++Q+++ + Sbjct: 2887 QNDRDRLLKELKNLQQQYLQINQEITELHPLKA------QLQEYQDKTKAFQIMQEELRQ 2940 Query: 115 KDLKGKHRLH 124 ++L +H LH Sbjct: 2941 ENLSWQHELH 2950 >gi|239735590 TRAF2 and NCK interacting kinase isoform 7 [Homo sapiens] Length = 1276 Score = 28.5 bits (62), Expect = 3.7 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 5/89 (5%) Query: 54 DITEGERESFLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKMLQKKIE 113 DIT R + + I+ D ++ E+RE E + P + TD++ + + E Sbjct: 702 DITRPSRPASYKKAIDEDLTALAKELRELRI----EETNRPMKKVTDYSSSSEESESSEE 757 Query: 114 EKDLKGKHRLHVDTGMEGDWCGLIPVGQP 142 E++ G+ H T D LIP G P Sbjct: 758 EEE-DGESETHDGTVAVSDIPRLIPTGAP 785 >gi|239735586 TRAF2 and NCK interacting kinase isoform 5 [Homo sapiens] Length = 1305 Score = 28.5 bits (62), Expect = 3.7 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 5/89 (5%) Query: 54 DITEGERESFLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKMLQKKIE 113 DIT R + + I+ D ++ E+RE E + P + TD++ + + E Sbjct: 731 DITRPSRPASYKKAIDEDLTALAKELRELRI----EETNRPMKKVTDYSSSSEESESSEE 786 Query: 114 EKDLKGKHRLHVDTGMEGDWCGLIPVGQP 142 E++ G+ H T D LIP G P Sbjct: 787 EEE-DGESETHDGTVAVSDIPRLIPTGAP 814 >gi|239735582 TRAF2 and NCK interacting kinase isoform 3 [Homo sapiens] Length = 1331 Score = 28.5 bits (62), Expect = 3.7 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 5/89 (5%) Query: 54 DITEGERESFLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKMLQKKIE 113 DIT R + + I+ D ++ E+RE E + P + TD++ + + E Sbjct: 757 DITRPSRPASYKKAIDEDLTALAKELRELRI----EETNRPMKKVTDYSSSSEESESSEE 812 Query: 114 EKDLKGKHRLHVDTGMEGDWCGLIPVGQP 142 E++ G+ H T D LIP G P Sbjct: 813 EEE-DGESETHDGTVAVSDIPRLIPTGAP 840 >gi|55741807 TRAF2 and NCK interacting kinase isoform 1 [Homo sapiens] Length = 1360 Score = 28.5 bits (62), Expect = 3.7 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 5/89 (5%) Query: 54 DITEGERESFLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKMLQKKIE 113 DIT R + + I+ D ++ E+RE E + P + TD++ + + E Sbjct: 786 DITRPSRPASYKKAIDEDLTALAKELRELRI----EETNRPMKKVTDYSSSSEESESSEE 841 Query: 114 EKDLKGKHRLHVDTGMEGDWCGLIPVGQP 142 E++ G+ H T D LIP G P Sbjct: 842 EEE-DGESETHDGTVAVSDIPRLIPTGAP 869 >gi|224586853 sorbin and SH3 domain containing 2 isoform 7 [Homo sapiens] Length = 1004 Score = 27.7 bits (60), Expect = 6.4 Identities = 14/49 (28%), Positives = 22/49 (44%) Query: 54 DITEGERESFLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFT 102 ++T E+ EF + D D + + +Y +G S D DH FT Sbjct: 486 EVTSDEQPRAHVEFSDSDQDGVVSDHSDYIHLEGSSFCSESDFDHFSFT 534 >gi|10947118 sorbin and SH3 domain containing 2 isoform 2 [Homo sapiens] Length = 1100 Score = 27.7 bits (60), Expect = 6.4 Identities = 14/49 (28%), Positives = 22/49 (44%) Query: 54 DITEGERESFLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFT 102 ++T E+ EF + D D + + +Y +G S D DH FT Sbjct: 582 EVTSDEQPRAHVEFSDSDQDGVVSDHSDYIHLEGSSFCSESDFDHFSFT 630 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.319 0.137 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,868,933 Number of Sequences: 37866 Number of extensions: 347083 Number of successful extensions: 670 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 662 Number of HSP's gapped (non-prelim): 13 length of query: 194 length of database: 18,247,518 effective HSP length: 97 effective length of query: 97 effective length of database: 14,574,516 effective search space: 1413728052 effective search space used: 1413728052 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.