Guide to the Human Genome
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Name: C6orf108 Sequence: fasta or formatted (174aa) NCBI GI: 5454002
Description:

putative c-Myc-responsive isoform 1

Referenced in:

Myc and Related Functions

Other entries for this name:
alt prot [148aa] putative c-Myc-responsive isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         21           3
 C cysteine            1.1          2           1
 D aspartate           5.2          9           1
 E glutamate          10.3         18           2
 F phenylalanine       3.4          6           1
 G glycine            10.9         19           2
 H histidine           1.1          2           1
 I isoleucine          2.9          5           1
 K lysine              0.6          1           1
 L leucine             8.6         15           2
 M methionine          1.7          3           1
 N asparagine          0.6          1           1
 P proline             5.2          9           2
 Q glutamine           4.0          7           2
 R arginine           10.9         19           2
 S serine              5.2          9           1
 T threonine           3.4          6           2
 V valine              8.0         14           3
 W tryptophan          1.7          3           1
 Y tyrosine            2.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   putative c-Myc-responsive isoform 1 
C6orf108              0.699   putative c-Myc-responsive isoform 2 
KIAA0913              0.015   hypothetical protein LOC23053 
TPK1                  0.012   thiamin pyrophosphokinase 1 isoform b 
TPK1                  0.012   thiamin pyrophosphokinase 1 isoform a 
C6orf47               0.009   G4 protein 
PSMC2                 0.006   proteasome 26S ATPase subunit 2 
PAFAH1B1              0.006   platelet-activating factor acetylhydrolase, isoform I...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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