Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 148728172

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|148728172 HIV-1 Tat interactive protein 2, 30kDa isoform b
[Homo sapiens]
         (242 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|148728172 HIV-1 Tat interactive protein 2, 30kDa isoform b [H...   483   e-137
gi|148728168 HIV-1 Tat interactive protein 2, 30kDa isoform b [H...   483   e-137
gi|148728166 HIV-1 Tat interactive protein 2, 30kDa isoform a [H...   483   e-137
gi|148728164 HIV-1 Tat interactive protein 2, 30kDa isoform b [H...   483   e-137
gi|148728170 HIV-1 Tat interactive protein 2, 30kDa isoform c [H...   201   4e-52
gi|4502419 biliverdin reductase B (flavin reductase (NADPH)) [Ho...    31   1.1  
gi|34878749 F-box protein 44 isoform 2 [Homo sapiens]                  30   1.4  
gi|34878735 F-box protein 44 isoform 1 [Homo sapiens]                  30   1.4  
gi|34878753 F-box protein 44 isoform 2 [Homo sapiens]                  30   1.4  
gi|62388868 F-box protein 44 isoform 1 [Homo sapiens]                  30   1.4  
gi|150417973 supervillin isoform 2 [Homo sapiens]                      30   2.5  
gi|150417971 supervillin isoform 1 [Homo sapiens]                      30   2.5  
gi|209413756 synapsin III isoform IIIg [Homo sapiens]                  28   5.5  

>gi|148728172 HIV-1 Tat interactive protein 2, 30kDa isoform b [Homo
           sapiens]
          Length = 242

 Score =  483 bits (1244), Expect = e-137
 Identities = 242/242 (100%), Positives = 242/242 (100%)

Query: 1   MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
           MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
Sbjct: 1   MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60

Query: 61  AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 120
           AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK
Sbjct: 61  AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 120

Query: 121 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 180
           AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG
Sbjct: 121 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 180

Query: 181 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL 240
           EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL
Sbjct: 181 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL 240

Query: 241 KP 242
           KP
Sbjct: 241 KP 242


>gi|148728168 HIV-1 Tat interactive protein 2, 30kDa isoform b [Homo
           sapiens]
          Length = 242

 Score =  483 bits (1244), Expect = e-137
 Identities = 242/242 (100%), Positives = 242/242 (100%)

Query: 1   MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
           MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
Sbjct: 1   MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60

Query: 61  AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 120
           AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK
Sbjct: 61  AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 120

Query: 121 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 180
           AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG
Sbjct: 121 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 180

Query: 181 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL 240
           EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL
Sbjct: 181 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL 240

Query: 241 KP 242
           KP
Sbjct: 241 KP 242


>gi|148728166 HIV-1 Tat interactive protein 2, 30kDa isoform a [Homo
           sapiens]
          Length = 276

 Score =  483 bits (1244), Expect = e-137
 Identities = 242/242 (100%), Positives = 242/242 (100%)

Query: 1   MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
           MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
Sbjct: 35  MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 94

Query: 61  AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 120
           AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK
Sbjct: 95  AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 154

Query: 121 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 180
           AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG
Sbjct: 155 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 214

Query: 181 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL 240
           EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL
Sbjct: 215 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL 274

Query: 241 KP 242
           KP
Sbjct: 275 KP 276


>gi|148728164 HIV-1 Tat interactive protein 2, 30kDa isoform b [Homo
           sapiens]
          Length = 242

 Score =  483 bits (1244), Expect = e-137
 Identities = 242/242 (100%), Positives = 242/242 (100%)

Query: 1   MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
           MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
Sbjct: 1   MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60

Query: 61  AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 120
           AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK
Sbjct: 61  AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 120

Query: 121 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 180
           AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG
Sbjct: 121 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 180

Query: 181 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL 240
           EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL
Sbjct: 181 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL 240

Query: 241 KP 242
           KP
Sbjct: 241 KP 242


>gi|148728170 HIV-1 Tat interactive protein 2, 30kDa isoform c [Homo
           sapiens]
          Length = 133

 Score =  201 bits (512), Expect = 4e-52
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
           MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
Sbjct: 1   MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60

Query: 61  AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGA 101
           AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGA
Sbjct: 61  AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGA 101


>gi|4502419 biliverdin reductase B (flavin reductase (NADPH))
          [Homo sapiens]
          Length = 206

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKL 75
          M  K + I GA+G+TG   L + ++ G   +VT++ R       E  +  +  V D  + 
Sbjct: 1  MAVKKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRLPSEGPRPAHVVVGDVLQA 58

Query: 76 DDYASAFQGHDVGFCCLGT 94
           D      G D     LGT
Sbjct: 59 ADVDKTVAGQDAVIVLLGT 77


>gi|34878749 F-box protein 44 isoform 2 [Homo sapiens]
          Length = 224

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 21/64 (32%), Positives = 30/64 (46%)

Query: 102 EGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDR 161
           EGF+  D D  +   ++       H NLL +  A++   F  L V G  E KVE+L  D+
Sbjct: 54  EGFITEDWDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQ 113

Query: 162 YSVF 165
              F
Sbjct: 114 RKEF 117


>gi|34878735 F-box protein 44 isoform 1 [Homo sapiens]
          Length = 255

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 21/64 (32%), Positives = 30/64 (46%)

Query: 102 EGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDR 161
           EGF+  D D  +   ++       H NLL +  A++   F  L V G  E KVE+L  D+
Sbjct: 54  EGFITEDWDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQ 113

Query: 162 YSVF 165
              F
Sbjct: 114 RKEF 117


>gi|34878753 F-box protein 44 isoform 2 [Homo sapiens]
          Length = 224

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 21/64 (32%), Positives = 30/64 (46%)

Query: 102 EGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDR 161
           EGF+  D D  +   ++       H NLL +  A++   F  L V G  E KVE+L  D+
Sbjct: 54  EGFITEDWDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQ 113

Query: 162 YSVF 165
              F
Sbjct: 114 RKEF 117


>gi|62388868 F-box protein 44 isoform 1 [Homo sapiens]
          Length = 255

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 21/64 (32%), Positives = 30/64 (46%)

Query: 102 EGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDR 161
           EGF+  D D  +   ++       H NLL +  A++   F  L V G  E KVE+L  D+
Sbjct: 54  EGFITEDWDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQ 113

Query: 162 YSVF 165
              F
Sbjct: 114 RKEF 117


>gi|150417973 supervillin isoform 2 [Homo sapiens]
          Length = 2214

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 4/86 (4%)

Query: 127  FNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQES---RPGEW- 182
            F L SS G   ++ F+Y      V + +  L+ D YS  +P + L D         G W 
Sbjct: 2004 FILSSSSGDFAATEFVYPARAPSVVSSMPFLQEDLYSAPQPALFLVDNHHEVYLWQGWWP 2063

Query: 183  LVRKFFGSLPDSWASGHSVPVVTVVR 208
            +  K  GS    WAS     + TV++
Sbjct: 2064 IENKITGSARIRWASDRKSAMETVLQ 2089


>gi|150417971 supervillin isoform 1 [Homo sapiens]
          Length = 1788

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 4/86 (4%)

Query: 127  FNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQES---RPGEW- 182
            F L SS G   ++ F+Y      V + +  L+ D YS  +P + L D         G W 
Sbjct: 1578 FILSSSSGDFAATEFVYPARAPSVVSSMPFLQEDLYSAPQPALFLVDNHHEVYLWQGWWP 1637

Query: 183  LVRKFFGSLPDSWASGHSVPVVTVVR 208
            +  K  GS    WAS     + TV++
Sbjct: 1638 IENKITGSARIRWASDRKSAMETVLQ 1663


>gi|209413756 synapsin III isoform IIIg [Homo sapiens]
          Length = 579

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 136 DKSSNFLYLQVKGEVEAKVEELKFDRYSV--FRPGVLLCDRQESRPGEWLVRKF 187
           D S  F   +V GE+E +VE+ +F   ++  +  G  + D Q  R G  +VR F
Sbjct: 103 DWSKYFHGKKVNGEIEIRVEQAEFSELNLAAYVTGGCMVDMQVVRNGTKVVRSF 156


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,410,227
Number of Sequences: 37866
Number of extensions: 346392
Number of successful extensions: 635
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 13
length of query: 242
length of database: 18,247,518
effective HSP length: 99
effective length of query: 143
effective length of database: 14,498,784
effective search space: 2073326112
effective search space used: 2073326112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press