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Search of human proteins with 148728168
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148728168 HIV-1 Tat interactive protein 2, 30kDa isoform b
[Homo sapiens]
(242 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148728172 HIV-1 Tat interactive protein 2, 30kDa isoform b [H... 483 e-137
gi|148728168 HIV-1 Tat interactive protein 2, 30kDa isoform b [H... 483 e-137
gi|148728166 HIV-1 Tat interactive protein 2, 30kDa isoform a [H... 483 e-137
gi|148728164 HIV-1 Tat interactive protein 2, 30kDa isoform b [H... 483 e-137
gi|148728170 HIV-1 Tat interactive protein 2, 30kDa isoform c [H... 201 4e-52
gi|4502419 biliverdin reductase B (flavin reductase (NADPH)) [Ho... 31 1.1
gi|34878749 F-box protein 44 isoform 2 [Homo sapiens] 30 1.4
gi|34878735 F-box protein 44 isoform 1 [Homo sapiens] 30 1.4
gi|34878753 F-box protein 44 isoform 2 [Homo sapiens] 30 1.4
gi|62388868 F-box protein 44 isoform 1 [Homo sapiens] 30 1.4
gi|150417973 supervillin isoform 2 [Homo sapiens] 30 2.5
gi|150417971 supervillin isoform 1 [Homo sapiens] 30 2.5
gi|209413756 synapsin III isoform IIIg [Homo sapiens] 28 5.5
>gi|148728172 HIV-1 Tat interactive protein 2, 30kDa isoform b [Homo
sapiens]
Length = 242
Score = 483 bits (1244), Expect = e-137
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
Sbjct: 1 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
Query: 61 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 120
AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK
Sbjct: 61 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 120
Query: 121 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 180
AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG
Sbjct: 121 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 180
Query: 181 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL 240
EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL
Sbjct: 181 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL 240
Query: 241 KP 242
KP
Sbjct: 241 KP 242
>gi|148728168 HIV-1 Tat interactive protein 2, 30kDa isoform b [Homo
sapiens]
Length = 242
Score = 483 bits (1244), Expect = e-137
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
Sbjct: 1 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
Query: 61 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 120
AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK
Sbjct: 61 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 120
Query: 121 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 180
AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG
Sbjct: 121 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 180
Query: 181 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL 240
EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL
Sbjct: 181 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL 240
Query: 241 KP 242
KP
Sbjct: 241 KP 242
>gi|148728166 HIV-1 Tat interactive protein 2, 30kDa isoform a [Homo
sapiens]
Length = 276
Score = 483 bits (1244), Expect = e-137
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
Sbjct: 35 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 94
Query: 61 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 120
AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK
Sbjct: 95 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 154
Query: 121 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 180
AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG
Sbjct: 155 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 214
Query: 181 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL 240
EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL
Sbjct: 215 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL 274
Query: 241 KP 242
KP
Sbjct: 275 KP 276
>gi|148728164 HIV-1 Tat interactive protein 2, 30kDa isoform b [Homo
sapiens]
Length = 242
Score = 483 bits (1244), Expect = e-137
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
Sbjct: 1 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
Query: 61 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 120
AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK
Sbjct: 61 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 120
Query: 121 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 180
AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG
Sbjct: 121 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 180
Query: 181 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL 240
EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL
Sbjct: 181 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL 240
Query: 241 KP 242
KP
Sbjct: 241 KP 242
>gi|148728170 HIV-1 Tat interactive protein 2, 30kDa isoform c [Homo
sapiens]
Length = 133
Score = 201 bits (512), Expect = 4e-52
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
Sbjct: 1 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
Query: 61 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGA 101
AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGA
Sbjct: 61 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGA 101
>gi|4502419 biliverdin reductase B (flavin reductase (NADPH))
[Homo sapiens]
Length = 206
Score = 30.8 bits (68), Expect = 1.1
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKL 75
M K + I GA+G+TG L + ++ G +VT++ R E + + V D +
Sbjct: 1 MAVKKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRLPSEGPRPAHVVVGDVLQA 58
Query: 76 DDYASAFQGHDVGFCCLGT 94
D G D LGT
Sbjct: 59 ADVDKTVAGQDAVIVLLGT 77
>gi|34878749 F-box protein 44 isoform 2 [Homo sapiens]
Length = 224
Score = 30.4 bits (67), Expect = 1.4
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 102 EGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDR 161
EGF+ D D + ++ H NLL + A++ F L V G E KVE+L D+
Sbjct: 54 EGFITEDWDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQ 113
Query: 162 YSVF 165
F
Sbjct: 114 RKEF 117
>gi|34878735 F-box protein 44 isoform 1 [Homo sapiens]
Length = 255
Score = 30.4 bits (67), Expect = 1.4
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 102 EGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDR 161
EGF+ D D + ++ H NLL + A++ F L V G E KVE+L D+
Sbjct: 54 EGFITEDWDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQ 113
Query: 162 YSVF 165
F
Sbjct: 114 RKEF 117
>gi|34878753 F-box protein 44 isoform 2 [Homo sapiens]
Length = 224
Score = 30.4 bits (67), Expect = 1.4
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 102 EGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDR 161
EGF+ D D + ++ H NLL + A++ F L V G E KVE+L D+
Sbjct: 54 EGFITEDWDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQ 113
Query: 162 YSVF 165
F
Sbjct: 114 RKEF 117
>gi|62388868 F-box protein 44 isoform 1 [Homo sapiens]
Length = 255
Score = 30.4 bits (67), Expect = 1.4
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 102 EGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDR 161
EGF+ D D + ++ H NLL + A++ F L V G E KVE+L D+
Sbjct: 54 EGFITEDWDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQ 113
Query: 162 YSVF 165
F
Sbjct: 114 RKEF 117
>gi|150417973 supervillin isoform 2 [Homo sapiens]
Length = 2214
Score = 29.6 bits (65), Expect = 2.5
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 127 FNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQES---RPGEW- 182
F L SS G ++ F+Y V + + L+ D YS +P + L D G W
Sbjct: 2004 FILSSSSGDFAATEFVYPARAPSVVSSMPFLQEDLYSAPQPALFLVDNHHEVYLWQGWWP 2063
Query: 183 LVRKFFGSLPDSWASGHSVPVVTVVR 208
+ K GS WAS + TV++
Sbjct: 2064 IENKITGSARIRWASDRKSAMETVLQ 2089
>gi|150417971 supervillin isoform 1 [Homo sapiens]
Length = 1788
Score = 29.6 bits (65), Expect = 2.5
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 127 FNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQES---RPGEW- 182
F L SS G ++ F+Y V + + L+ D YS +P + L D G W
Sbjct: 1578 FILSSSSGDFAATEFVYPARAPSVVSSMPFLQEDLYSAPQPALFLVDNHHEVYLWQGWWP 1637
Query: 183 LVRKFFGSLPDSWASGHSVPVVTVVR 208
+ K GS WAS + TV++
Sbjct: 1638 IENKITGSARIRWASDRKSAMETVLQ 1663
>gi|209413756 synapsin III isoform IIIg [Homo sapiens]
Length = 579
Score = 28.5 bits (62), Expect = 5.5
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 136 DKSSNFLYLQVKGEVEAKVEELKFDRYSV--FRPGVLLCDRQESRPGEWLVRKF 187
D S F +V GE+E +VE+ +F ++ + G + D Q R G +VR F
Sbjct: 103 DWSKYFHGKKVNGEIEIRVEQAEFSELNLAAYVTGGCMVDMQVVRNGTKVVRSF 156
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,410,227
Number of Sequences: 37866
Number of extensions: 346392
Number of successful extensions: 635
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 13
length of query: 242
length of database: 18,247,518
effective HSP length: 99
effective length of query: 143
effective length of database: 14,498,784
effective search space: 2073326112
effective search space used: 2073326112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.