Guide to the Human Genome
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Name: C12orf5 Sequence: fasta or formatted (270aa) NCBI GI: 9966849
Description:

TP53-induced glycolysis and apoptosis regulator

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         18           4
 C cysteine            2.6          7           1
 D aspartate           4.1         11           1
 E glutamate           7.8         21           2
 F phenylalanine       6.3         17           2
 G glycine             7.0         19           2
 H histidine           2.2          6           1
 I isoleucine          4.1         11           2
 K lysine              6.7         18           1
 L leucine            10.0         27           1
 M methionine          3.7         10           1
 N asparagine          3.7         10           2
 P proline             3.7         10           2
 Q glutamine           4.1         11           1
 R arginine            5.6         15           1
 S serine              8.1         22           2
 T threonine           6.3         17           1
 V valine              5.9         16           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TP53-induced glycolysis and apoptosis regulator [Homo... 
PGAM2                 0.033   bisphosphoglycerate mutase 2 
BPGM                  0.031   bisphosphoglycerate mutase 
BPGM                  0.031   bisphosphoglycerate mutase 
PGAM1                 0.027   bisphosphoglycerate mutase 1 
PGAM4                 0.016   bisphosphoglycerate mutase 4 
UBASH3A               0.012   ubiquitin associated and SH3 domain containing, A sh...
UBASH3A               0.012   ubiquitin associated and SH3 domain containing, A lon...
CDK5RAP2              0.010   CDK5 regulatory subunit associated protein 2 isoform...
CDK5RAP2              0.010   CDK5 regulatory subunit associated protein 2 isoform...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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