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Search of human proteins with 9910184
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|9910184 hypothetical protein LOC56942 [Homo sapiens]
(79 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|9910184 hypothetical protein LOC56942 [Homo sapiens] 173 3e-44
gi|226491199 coiled-coil domain containing 38 [Homo sapiens] 34 0.022
gi|32698876 COX assembly mitochondrial protein homolog [Homo sap... 29 0.93
gi|153791535 general control of amino acid synthesis 5-like 2 [H... 27 2.7
gi|53933287 olfactory receptor, family 5, subfamily K, member 4 ... 27 2.7
gi|224282165 zinc finger protein 200 isoform 3 [Homo sapiens] 27 3.5
gi|224282163 zinc finger protein 200 isoform 3 [Homo sapiens] 27 3.5
gi|224282161 zinc finger protein 200 isoform 3 [Homo sapiens] 27 3.5
gi|37675270 zinc finger protein 200 isoform 1 [Homo sapiens] 27 3.5
gi|37675268 zinc finger protein 200 isoform 2 [Homo sapiens] 27 3.5
gi|37675273 zinc finger protein 200 isoform 1 [Homo sapiens] 27 3.5
gi|40805843 K(lysine) acetyltransferase 2B [Homo sapiens] 26 6.0
gi|224282178 GDNF family receptor alpha 1 isoform b preproprotei... 26 7.9
gi|22035692 GDNF family receptor alpha 1 isoform b preproprotein... 26 7.9
gi|4885269 GDNF family receptor alpha 1 isoform a preproprotein ... 26 7.9
gi|22907049 aldehyde dehydrogenase 3A1 [Homo sapiens] 26 7.9
gi|206597441 aldehyde dehydrogenase 3A1 [Homo sapiens] 26 7.9
gi|206597439 aldehyde dehydrogenase 3A1 [Homo sapiens] 26 7.9
>gi|9910184 hypothetical protein LOC56942 [Homo sapiens]
Length = 79
Score = 173 bits (438), Expect = 3e-44
Identities = 79/79 (100%), Positives = 79/79 (100%)
Query: 1 MHPDLSPHLHTEECNVLINLLKECHKNHNILKFFGYCNDVDRELRKCLKNEYVENRTKSR 60
MHPDLSPHLHTEECNVLINLLKECHKNHNILKFFGYCNDVDRELRKCLKNEYVENRTKSR
Sbjct: 1 MHPDLSPHLHTEECNVLINLLKECHKNHNILKFFGYCNDVDRELRKCLKNEYVENRTKSR 60
Query: 61 EHGIAMRKKLFNPPEESEK 79
EHGIAMRKKLFNPPEESEK
Sbjct: 61 EHGIAMRKKLFNPPEESEK 79
>gi|226491199 coiled-coil domain containing 38 [Homo sapiens]
Length = 563
Score = 34.3 bits (77), Expect = 0.022
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 1 MHPDLSPHLHTEECNVLINLLKECHKNHNILKFFGYCNDVDRELRKCLKNE-YVENRTKS 59
M DL P L+ +E L+ +L+E + + L F Y DVD L + K E ++++T S
Sbjct: 326 MDVDLEPALYFKEPEELLQVLRELEEQN--LTLFQYSQDVDENLEEVNKREKVIQDKTNS 383
Query: 60 REHGIAMRKKLF--NPPEESEK 79
+ ++K+ N E EK
Sbjct: 384 NIEFLLEQEKMLKANCVREEEK 405
>gi|32698876 COX assembly mitochondrial protein homolog [Homo
sapiens]
Length = 106
Score = 28.9 bits (63), Expect = 0.93
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 14/76 (18%)
Query: 12 EECNVLINLLKECHKNHNILKFFGYCNDVDRELRKCL-------------KNEYVENRTK 58
E C+ + +C KN +L C + L++CL K EY++ R +
Sbjct: 29 ERCSEQVQDFTKCCKNSGVLMVVK-CRKENSALKECLTAYYNDPAFYEECKMEYLKEREE 87
Query: 59 SREHGIAMRKKLFNPP 74
R+ GI +K+L P
Sbjct: 88 FRKTGIPTKKRLQKLP 103
>gi|153791535 general control of amino acid synthesis 5-like 2 [Homo
sapiens]
Length = 837
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 17 LINLLKECHKNHNILKFFGYCND 39
L+N LKE H HNIL F Y ++
Sbjct: 594 LMNHLKEYHIKHNILYFLTYADE 616
>gi|53933287 olfactory receptor, family 5, subfamily K, member 4
[Homo sapiens]
Length = 321
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 3 PDLSPHLHTEECNVLINLLKECHKNHNILK 32
P L+P +++ +IN+LK+ +N+NILK
Sbjct: 280 PLLNPFIYSLRNKEVINVLKKIMRNYNILK 309
>gi|224282165 zinc finger protein 200 isoform 3 [Homo sapiens]
Length = 394
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 46 KCLKNEYVENRTKSREHGIAMRKKLFNPPE 75
+C KN + +N +SR GI +R+K+F PE
Sbjct: 311 QCGKN-FRQNSHRSRHEGIHIREKIFKCPE 339
>gi|224282163 zinc finger protein 200 isoform 3 [Homo sapiens]
Length = 394
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 46 KCLKNEYVENRTKSREHGIAMRKKLFNPPE 75
+C KN + +N +SR GI +R+K+F PE
Sbjct: 311 QCGKN-FRQNSHRSRHEGIHIREKIFKCPE 339
>gi|224282161 zinc finger protein 200 isoform 3 [Homo sapiens]
Length = 394
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 46 KCLKNEYVENRTKSREHGIAMRKKLFNPPE 75
+C KN + +N +SR GI +R+K+F PE
Sbjct: 311 QCGKN-FRQNSHRSRHEGIHIREKIFKCPE 339
>gi|37675270 zinc finger protein 200 isoform 1 [Homo sapiens]
Length = 395
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 46 KCLKNEYVENRTKSREHGIAMRKKLFNPPE 75
+C KN + +N +SR GI +R+K+F PE
Sbjct: 312 QCGKN-FRQNSHRSRHEGIHIREKIFKCPE 340
>gi|37675268 zinc finger protein 200 isoform 2 [Homo sapiens]
Length = 394
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 46 KCLKNEYVENRTKSREHGIAMRKKLFNPPE 75
+C KN + +N +SR GI +R+K+F PE
Sbjct: 311 QCGKN-FRQNSHRSRHEGIHIREKIFKCPE 339
>gi|37675273 zinc finger protein 200 isoform 1 [Homo sapiens]
Length = 395
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 46 KCLKNEYVENRTKSREHGIAMRKKLFNPPE 75
+C KN + +N +SR GI +R+K+F PE
Sbjct: 312 QCGKN-FRQNSHRSRHEGIHIREKIFKCPE 340
>gi|40805843 K(lysine) acetyltransferase 2B [Homo sapiens]
Length = 832
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 17 LINLLKECHKNHNILKFFGYCND 39
L+N LKE H H+IL F Y ++
Sbjct: 589 LMNHLKEYHIKHDILNFLTYADE 611
>gi|224282178 GDNF family receptor alpha 1 isoform b preproprotein
[Homo sapiens]
Length = 460
Score = 25.8 bits (55), Expect = 7.9
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 18 INLLKECHKNH----NILKFFGYCNDVDRELRKCLKNEYVE 54
+NL C N+ + FF C R + CLK Y +
Sbjct: 239 LNLQDSCKTNYICRSRLADFFTNCQPESRSVSSCLKENYAD 279
>gi|22035692 GDNF family receptor alpha 1 isoform b preproprotein
[Homo sapiens]
Length = 460
Score = 25.8 bits (55), Expect = 7.9
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 18 INLLKECHKNH----NILKFFGYCNDVDRELRKCLKNEYVE 54
+NL C N+ + FF C R + CLK Y +
Sbjct: 239 LNLQDSCKTNYICRSRLADFFTNCQPESRSVSSCLKENYAD 279
>gi|4885269 GDNF family receptor alpha 1 isoform a preproprotein
[Homo sapiens]
Length = 465
Score = 25.8 bits (55), Expect = 7.9
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 18 INLLKECHKNH----NILKFFGYCNDVDRELRKCLKNEYVE 54
+NL C N+ + FF C R + CLK Y +
Sbjct: 244 LNLQDSCKTNYICRSRLADFFTNCQPESRSVSSCLKENYAD 284
>gi|22907049 aldehyde dehydrogenase 3A1 [Homo sapiens]
Length = 453
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 38 NDVDRELRKCLKNEYVENRTKSREHG 63
N + +L+K LK Y E+ KSR++G
Sbjct: 258 NQIVEKLKKSLKEFYGEDAKKSRDYG 283
>gi|206597441 aldehyde dehydrogenase 3A1 [Homo sapiens]
Length = 453
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 38 NDVDRELRKCLKNEYVENRTKSREHG 63
N + +L+K LK Y E+ KSR++G
Sbjct: 258 NQIVEKLKKSLKEFYGEDAKKSRDYG 283
>gi|206597439 aldehyde dehydrogenase 3A1 [Homo sapiens]
Length = 453
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 38 NDVDRELRKCLKNEYVENRTKSREHG 63
N + +L+K LK Y E+ KSR++G
Sbjct: 258 NQIVEKLKKSLKEFYGEDAKKSRDYG 283
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,558,437
Number of Sequences: 37866
Number of extensions: 126956
Number of successful extensions: 341
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 329
Number of HSP's gapped (non-prelim): 21
length of query: 79
length of database: 18,247,518
effective HSP length: 51
effective length of query: 28
effective length of database: 16,316,352
effective search space: 456857856
effective search space used: 456857856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.