Search of human proteins with 8923812

Search of human proteins with 8923812

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|8923812 acyl-CoA thioesterase 13 isoform 1 [Homo sapiens]
         (140 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|8923812 acyl-CoA thioesterase 13 isoform 1 [Homo sapiens]          274   2e-74
gi|231567183 acyl-CoA thioesterase 13 isoform 2 [Homo sapiens]        226   4e-60
gi|76159293 thioesterase superfamily member 4 [Homo sapiens]           31   0.29 
gi|22165400 thioesterase, adipose associated isoform BFIT2 [Homo...    28   2.5  
gi|22165355 thioesterase, adipose associated isoform BFIT1 [Homo...    28   2.5  
gi|31711992 dihydrolipoamide S-acetyltransferase [Homo sapiens]        27   7.1  
gi|13376880 THUMP domain containing 2 [Homo sapiens]                   27   7.1  

>gi|8923812 acyl-CoA thioesterase 13 isoform 1 [Homo sapiens]
          Length = 140

 Score =  274 bits (701), Expect = 2e-74
 Identities = 140/140 (100%), Positives = 140/140 (100%)

Query: 1   MTSMTQSLREVIKAMTKARNFERVLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLT 60
           MTSMTQSLREVIKAMTKARNFERVLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLT
Sbjct: 1   MTSMTQSLREVIKAMTKARNFERVLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLT 60

Query: 61  ATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDL 120
           ATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDL
Sbjct: 61  ATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDL 120

Query: 121 TNKATGKLIAQGRHTKHLGN 140
           TNKATGKLIAQGRHTKHLGN
Sbjct: 121 TNKATGKLIAQGRHTKHLGN 140


>gi|231567183 acyl-CoA thioesterase 13 isoform 2 [Homo sapiens]
          Length = 117

 Score =  226 bits (577), Expect = 4e-60
 Identities = 114/114 (100%), Positives = 114/114 (100%)

Query: 27  KITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDM 86
           KITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDM
Sbjct: 4   KITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDM 63

Query: 87  NITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHLGN 140
           NITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHLGN
Sbjct: 64  NITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHLGN 117


>gi|76159293 thioesterase superfamily member 4 [Homo sapiens]
          Length = 240

 Score = 31.2 bits (69), Expect = 0.29
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 53  GTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLK 108
           G +HGG  AT++D  +T+ +     G   ++ ++NI Y  P  L   ++I + + K
Sbjct: 149 GFIHGGAIATMID--ATVGMCAMMAGGIVMTANLNINYKRPIPLCSVVMINSQLDK 202


>gi|22165400 thioesterase, adipose associated isoform BFIT2 [Homo
           sapiens]
          Length = 594

 Score = 28.1 bits (61), Expect = 2.5
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 48  HTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHV 106
           H N  G   GG     ++N++T+A     R  P +       +  P+++G+ +V+ A V
Sbjct: 230 HANHQGNTFGGQIMAWMENVATIAASRLCRAHPTLKAIEMFHFRGPSQVGDRLVLKAIV 288


>gi|22165355 thioesterase, adipose associated isoform BFIT1 [Homo
           sapiens]
          Length = 607

 Score = 28.1 bits (61), Expect = 2.5
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 48  HTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHV 106
           H N  G   GG     ++N++T+A     R  P +       +  P+++G+ +V+ A V
Sbjct: 230 HANHQGNTFGGQIMAWMENVATIAASRLCRAHPTLKAIEMFHFRGPSQVGDRLVLKAIV 288


>gi|31711992 dihydrolipoamide S-acetyltransferase [Homo sapiens]
          Length = 647

 Score = 26.6 bits (57), Expect = 7.1
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 84  VDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKA-TGKL 128
           VD+++   +PA L   IV  AH+ K  +T+A   V L  KA  GKL
Sbjct: 509 VDVSVAVSTPAGLITPIVFNAHI-KGVETIANDVVSLATKAREGKL 553


>gi|13376880 THUMP domain containing 2 [Homo sapiens]
          Length = 473

 Score = 26.6 bits (57), Expect = 7.1
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 25  LGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSV 84
           LG I L +A     +  +  +   +  +GT      A L D I  + +   E   P  SV
Sbjct: 279 LGTILLEAAKEWPDVYYVGADVSDSQLLGTWDNLKAAGLEDKIELLKISVIELPLPSESV 338

Query: 85  DM---NITYMSPAKLGEDI 100
           D+   +I +    KLG+DI
Sbjct: 339 DIIISDIPFGKKFKLGKDI 357


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.129    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,600,324
Number of Sequences: 37866
Number of extensions: 162863
Number of successful extensions: 303
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 7
length of query: 140
length of database: 18,247,518
effective HSP length: 92
effective length of query: 48
effective length of database: 14,763,846
effective search space: 708664608
effective search space used: 708664608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.