Search of human proteins with 8923785

Search of human proteins with 8923785

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|8923785 leptin receptor gene-related protein [Homo sapiens]
         (131 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|8923785 leptin receptor gene-related protein [Homo sapiens]        268   9e-73
gi|189571652 leptin receptor overlapping transcript-like 1 isofo...   193   3e-50
gi|189571654 leptin receptor overlapping transcript-like 1 isofo...   130   4e-31

>gi|8923785 leptin receptor gene-related protein [Homo sapiens]
          Length = 131

 Score =  268 bits (685), Expect = 9e-73
 Identities = 131/131 (100%), Positives = 131/131 (100%)

Query: 1   MAGVKALVALSFSGAIGLTFLMLGCALEDYGVYWPLFVLIFHAISPIPHFIAKRVTYDSD 60
           MAGVKALVALSFSGAIGLTFLMLGCALEDYGVYWPLFVLIFHAISPIPHFIAKRVTYDSD
Sbjct: 1   MAGVKALVALSFSGAIGLTFLMLGCALEDYGVYWPLFVLIFHAISPIPHFIAKRVTYDSD 60

Query: 61  ATSSACRELAYFFTTGIVVSAFGFPVILARVAVIKWGACGLVLAGNAVIFLTIQGFFLIF 120
           ATSSACRELAYFFTTGIVVSAFGFPVILARVAVIKWGACGLVLAGNAVIFLTIQGFFLIF
Sbjct: 61  ATSSACRELAYFFTTGIVVSAFGFPVILARVAVIKWGACGLVLAGNAVIFLTIQGFFLIF 120

Query: 121 GRGDDFSWEQW 131
           GRGDDFSWEQW
Sbjct: 121 GRGDDFSWEQW 131


>gi|189571652 leptin receptor overlapping transcript-like 1 isoform
           1 [Homo sapiens]
          Length = 131

 Score =  193 bits (491), Expect = 3e-50
 Identities = 89/131 (67%), Positives = 106/131 (80%)

Query: 1   MAGVKALVALSFSGAIGLTFLMLGCALEDYGVYWPLFVLIFHAISPIPHFIAKRVTYDSD 60
           MAG+KAL++LSF GAIGL FLMLGCAL  Y  YWPLFVL F+ +SPIP+ IA+R+  D+D
Sbjct: 1   MAGIKALISLSFGGAIGLMFLMLGCALPIYNKYWPLFVLFFYILSPIPYCIARRLVDDTD 60

Query: 61  ATSSACRELAYFFTTGIVVSAFGFPVILARVAVIKWGACGLVLAGNAVIFLTIQGFFLIF 120
           A S+AC+ELA F TTGIVVSAFG P++ AR  +I+WGAC LVL GN VIF TI GFFL+F
Sbjct: 61  AMSNACKELAIFLTTGIVVSAFGLPIVFARAHLIEWGACALVLTGNTVIFATILGFFLVF 120

Query: 121 GRGDDFSWEQW 131
           G  DDFSW+QW
Sbjct: 121 GSNDDFSWQQW 131


>gi|189571654 leptin receptor overlapping transcript-like 1
          isoform 2 [Homo sapiens]
          Length = 169

 Score =  130 bits (326), Expect = 4e-31
 Identities = 61/90 (67%), Positives = 74/90 (82%)

Query: 1  MAGVKALVALSFSGAIGLTFLMLGCALEDYGVYWPLFVLIFHAISPIPHFIAKRVTYDSD 60
          MAG+KAL++LSF GAIGL FLMLGCAL  Y  YWPLFVL F+ +SPIP+ IA+R+  D+D
Sbjct: 1  MAGIKALISLSFGGAIGLMFLMLGCALPIYNKYWPLFVLFFYILSPIPYCIARRLVDDTD 60

Query: 61 ATSSACRELAYFFTTGIVVSAFGFPVILAR 90
          A S+AC+ELA F TTGIVVSAFG P++ AR
Sbjct: 61 AMSNACKELAIFLTTGIVVSAFGLPIVFAR 90


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.332    0.145    0.477 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,345,940
Number of Sequences: 37866
Number of extensions: 153196
Number of successful extensions: 314
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 3
length of query: 131
length of database: 18,247,518
effective HSP length: 91
effective length of query: 40
effective length of database: 14,801,712
effective search space: 592068480
effective search space used: 592068480
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.