Search of human proteins with 8923532

Search of human proteins with 8923532

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|8923532 CLN6 protein [Homo sapiens]
         (311 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|8923532 CLN6 protein [Homo sapiens]                                643   0.0  
gi|211063479 major facilitator superfamily domain containing 2 i...    30   2.7  
gi|42713696 major facilitator superfamily domain containing 2 is...    30   2.7  
gi|219802232 solute carrier family 13, member 5 isoform b [Homo ...    29   6.1  
gi|29171306 solute carrier family 13, member 5 isoform a [Homo s...    29   6.1  
gi|4506541 retinaldehyde binding protein 1 [Homo sapiens]              29   6.1  
gi|4758326 coagulation factor II (thrombin) receptor-like 2 prec...    28   8.0  
gi|22779860 forkhead box L1 [Homo sapiens]                             28   8.0  

>gi|8923532 CLN6 protein [Homo sapiens]
          Length = 311

 Score =  643 bits (1659), Expect = 0.0
 Identities = 311/311 (100%), Positives = 311/311 (100%)

Query: 1   MEATRRRQHLGATGGPGAQLGASFLQARHGSVSADEAARTAPFHLDLWFYFTLQNWVLDF 60
           MEATRRRQHLGATGGPGAQLGASFLQARHGSVSADEAARTAPFHLDLWFYFTLQNWVLDF
Sbjct: 1   MEATRRRQHLGATGGPGAQLGASFLQARHGSVSADEAARTAPFHLDLWFYFTLQNWVLDF 60

Query: 61  GRPIAMLVFPLEWFPLNKPSVGDYFHMAYNVITPFLLLKLIERSPRTLPRSITYVSIIIF 120
           GRPIAMLVFPLEWFPLNKPSVGDYFHMAYNVITPFLLLKLIERSPRTLPRSITYVSIIIF
Sbjct: 61  GRPIAMLVFPLEWFPLNKPSVGDYFHMAYNVITPFLLLKLIERSPRTLPRSITYVSIIIF 120

Query: 121 IMGASIHLVGDSVNHRLLFSGYQHHLSVRENPIIKNLKPETLIDSFELLYYYDEYLGHCM 180
           IMGASIHLVGDSVNHRLLFSGYQHHLSVRENPIIKNLKPETLIDSFELLYYYDEYLGHCM
Sbjct: 121 IMGASIHLVGDSVNHRLLFSGYQHHLSVRENPIIKNLKPETLIDSFELLYYYDEYLGHCM 180

Query: 181 WYIPFFLILFMYFSGCFTASKAESLIPGPALLLVAPSGLYYWYLVTEGQIFILFIFTFFA 240
           WYIPFFLILFMYFSGCFTASKAESLIPGPALLLVAPSGLYYWYLVTEGQIFILFIFTFFA
Sbjct: 181 WYIPFFLILFMYFSGCFTASKAESLIPGPALLLVAPSGLYYWYLVTEGQIFILFIFTFFA 240

Query: 241 MLALVLHQKRKRLFLDSNGLFLFSSFALTLLLVALWVAWLWNDPVLRKKYPGVIYVPEPW 300
           MLALVLHQKRKRLFLDSNGLFLFSSFALTLLLVALWVAWLWNDPVLRKKYPGVIYVPEPW
Sbjct: 241 MLALVLHQKRKRLFLDSNGLFLFSSFALTLLLVALWVAWLWNDPVLRKKYPGVIYVPEPW 300

Query: 301 AFYTLHVSSRH 311
           AFYTLHVSSRH
Sbjct: 301 AFYTLHVSSRH 311


>gi|211063479 major facilitator superfamily domain containing 2
           isoform 1 [Homo sapiens]
          Length = 543

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 18/89 (20%)

Query: 53  LQNWVLDFGRPIAMLVFPLEWFPLNKPSVGDY---------------FHMAYNVITPFLL 97
           L  W++ F  P+A++ + L WF  + P    Y               FH+ Y+ +T F+ 
Sbjct: 128 LMPWII-FSTPLAVIAYFLIWFVPDFPHGQTYWYLLFYCLFETMVTCFHVPYSALTMFIS 186

Query: 98  LKLIERSPRTLPRSITYVSIIIFIMGASI 126
            +  ER   T  R    V ++  ++G +I
Sbjct: 187 TEQTERDSATAYRMT--VEVLGTVLGTAI 213


>gi|42713696 major facilitator superfamily domain containing 2
           isoform 2 [Homo sapiens]
          Length = 530

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 18/89 (20%)

Query: 53  LQNWVLDFGRPIAMLVFPLEWFPLNKPSVGDY---------------FHMAYNVITPFLL 97
           L  W++ F  P+A++ + L WF  + P    Y               FH+ Y+ +T F+ 
Sbjct: 115 LMPWII-FSTPLAVIAYFLIWFVPDFPHGQTYWYLLFYCLFETMVTCFHVPYSALTMFIS 173

Query: 98  LKLIERSPRTLPRSITYVSIIIFIMGASI 126
            +  ER   T  R    V ++  ++G +I
Sbjct: 174 TEQTERDSATAYRMT--VEVLGTVLGTAI 200


>gi|219802232 solute carrier family 13, member 5 isoform b [Homo
           sapiens]
          Length = 522

 Score = 28.9 bits (63), Expect = 6.1
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 244 LVLHQKRKRLFLDSNGLFLFSS---FALTLLLVALWVAWLW 281
           +VL  +   LF DS  L  F+S   FA   +LV L  AWLW
Sbjct: 231 VVLLGQMNELFPDSKDLVNFASWFAFAFPNMLVMLLFAWLW 271


>gi|29171306 solute carrier family 13, member 5 isoform a [Homo
           sapiens]
          Length = 568

 Score = 28.9 bits (63), Expect = 6.1
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 244 LVLHQKRKRLFLDSNGLFLFSS---FALTLLLVALWVAWLW 281
           +VL  +   LF DS  L  F+S   FA   +LV L  AWLW
Sbjct: 231 VVLLGQMNELFPDSKDLVNFASWFAFAFPNMLVMLLFAWLW 271


>gi|4506541 retinaldehyde binding protein 1 [Homo sapiens]
          Length = 317

 Score = 28.9 bits (63), Expect = 6.1
 Identities = 12/20 (60%), Positives = 14/20 (70%)

Query: 84  YFHMAYNVITPFLLLKLIER 103
           YF   YNV+ PFL  KL+ER
Sbjct: 246 YFTTTYNVVKPFLKSKLLER 265


>gi|4758326 coagulation factor II (thrombin) receptor-like 2
           precursor [Homo sapiens]
          Length = 374

 Score = 28.5 bits (62), Expect = 8.0
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 180 MWYIPFFLILFMYFSGCFTASKAESLIPGPALLLVAPSGLYYWYLV 225
           +WY+   L++ + F+ CF  S    +I           GLY+ YL+
Sbjct: 297 LWYVKASLLILVIFTICFAPSNIILIIHHANYYYNNTDGLYFIYLI 342


>gi|22779860 forkhead box L1 [Homo sapiens]
          Length = 345

 Score = 28.5 bits (62), Expect = 8.0
 Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 14/75 (18%)

Query: 11  GATGGPGAQLGASFLQARHGSVSADEAARTAPFHLDLWFYFTLQNWVLDFGRPIAMLVFP 70
           GA  GPG +LGAS L A         ++   PF+  L     +Q      G P       
Sbjct: 284 GAKPGPGGRLGASLLAA--------SSSLRPPFNASLMLDPHVQGGFYQLGIPF------ 329

Query: 71  LEWFPLNKPSVGDYF 85
           L +FPL  P    +F
Sbjct: 330 LSYFPLQVPDTVLHF 344


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.330    0.144    0.472 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,279,045
Number of Sequences: 37866
Number of extensions: 524598
Number of successful extensions: 1398
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1395
Number of HSP's gapped (non-prelim): 9
length of query: 311
length of database: 18,247,518
effective HSP length: 102
effective length of query: 209
effective length of database: 14,385,186
effective search space: 3006503874
effective search space used: 3006503874
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.