Search of human proteins with 14150084

Search of human proteins with 14150084

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|14150084 nicolin 1 [Homo sapiens]
         (213 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|14150084 nicolin 1 [Homo sapiens]                                  439   e-123
gi|56549696 E1A binding protein p400 [Homo sapiens]                    31   0.68 
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo...    30   1.5  
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo...    30   1.5  
gi|48476182 roundabout, axon guidance receptor, homolog 3 [Homo ...    28   5.8  
gi|21493022 A kinase (PRKA) anchor protein 12 isoform 1 [Homo sa...    28   7.6  
gi|21493024 A kinase (PRKA) anchor protein 12 isoform 2 [Homo sa...    28   7.6  
gi|9558729 golgi associated, gamma adaptin ear containing, ARF b...    27   9.9  
gi|48527952 golgi associated, gamma adaptin ear containing, ARF ...    27   9.9  

>gi|14150084 nicolin 1 [Homo sapiens]
          Length = 213

 Score =  439 bits (1128), Expect = e-123
 Identities = 213/213 (100%), Positives = 213/213 (100%)

Query: 1   MSRVLVPCHVKGSVALQVGDVRTSQGRPGVLVIDVTFPSVAPFELQEITFKNYYTAFLSI 60
           MSRVLVPCHVKGSVALQVGDVRTSQGRPGVLVIDVTFPSVAPFELQEITFKNYYTAFLSI
Sbjct: 1   MSRVLVPCHVKGSVALQVGDVRTSQGRPGVLVIDVTFPSVAPFELQEITFKNYYTAFLSI 60

Query: 61  RVRQYTSAHTPAKWVTCLRDYCLMPDPHSEEGAQEYVSLFKHQMLCDMARISELRLILRQ 120
           RVRQYTSAHTPAKWVTCLRDYCLMPDPHSEEGAQEYVSLFKHQMLCDMARISELRLILRQ
Sbjct: 61  RVRQYTSAHTPAKWVTCLRDYCLMPDPHSEEGAQEYVSLFKHQMLCDMARISELRLILRQ 120

Query: 121 PSPLWLSFTVEELQIYQQGPKSPSVTFPKWLSHPVPCEQPALLREGLPDPSRVSSEVQQM 180
           PSPLWLSFTVEELQIYQQGPKSPSVTFPKWLSHPVPCEQPALLREGLPDPSRVSSEVQQM
Sbjct: 121 PSPLWLSFTVEELQIYQQGPKSPSVTFPKWLSHPVPCEQPALLREGLPDPSRVSSEVQQM 180

Query: 181 WALTEMIRASHTSARIGRFDVDGCYDLNLLSYT 213
           WALTEMIRASHTSARIGRFDVDGCYDLNLLSYT
Sbjct: 181 WALTEMIRASHTSARIGRFDVDGCYDLNLLSYT 213


>gi|56549696 E1A binding protein p400 [Homo sapiens]
          Length = 3122

 Score = 31.2 bits (69), Expect = 0.68
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 132 ELQIYQQGPKSPSVTFPKWLSHPVPCEQPALLREGLPDPSRVSSEVQQMWALTEMIRAS 190
           ++ +  Q P  P +  P     P+P  QPA L   +P P +V  +  Q+ +L +M+ ++
Sbjct: 590 QIPVKTQQPNVP-IPAPPSSQLPIPPSQPAQLALHVPTPGKVQVQASQLSSLPQMVAST 647


>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
           sapiens]
          Length = 870

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 17/76 (22%)

Query: 118 LRQPSPLWLSF-------TVEELQIY----------QQGPKSPSVTFPKWLSHPVPCEQP 160
           L QPSP W S        T +E  +Y           + P+ P+V        PVP   P
Sbjct: 539 LEQPSPSWSSRASFSSFDTTDEGPVYCVPHEEAPAESRDPEVPTVPAEAPAPSPVPLTTP 598

Query: 161 ALLREGLPDPSRVSSE 176
           A   E +P P+   SE
Sbjct: 599 ASAEEAIPLPASSDSE 614


>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
           sapiens]
          Length = 865

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 17/76 (22%)

Query: 118 LRQPSPLWLSF-------TVEELQIY----------QQGPKSPSVTFPKWLSHPVPCEQP 160
           L QPSP W S        T +E  +Y           + P+ P+V        PVP   P
Sbjct: 534 LEQPSPSWSSRASFSSFDTTDEGPVYCVPHEEAPAESRDPEVPTVPAEAPAPSPVPLTTP 593

Query: 161 ALLREGLPDPSRVSSE 176
           A   E +P P+   SE
Sbjct: 594 ASAEEAIPLPASSDSE 609


>gi|48476182 roundabout, axon guidance receptor, homolog 3 [Homo
           sapiens]
          Length = 1386

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 2   SRVLVPCHVKGSVALQVGDVRTSQGRPGVLVIDVTFPSVAPFELQEITFKNYYTAFLSIR 61
           S V +PC V G+    V   +  Q   G    D+ F ++A   L     +     F S  
Sbjct: 466 SSVWLPCRVTGNPQPSVRWKKDGQWLQGD---DLQFKTMANGTLYIANVQEMDMGFYSCV 522

Query: 62  VRQYTSAHTPAKWVTCLRDYCLMPDPHSE 90
            +  T   T + W+    D+ + PDP +E
Sbjct: 523 AKSSTGEATWSGWLKMREDWGVSPDPPTE 551


>gi|21493022 A kinase (PRKA) anchor protein 12 isoform 1 [Homo
           sapiens]
          Length = 1782

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 3/98 (3%)

Query: 102 HQMLCDMARISELRLILRQPSPLWLSFTVEELQIYQQGPKSPSVTFPKWLSHPVPCEQPA 161
           H M   +A  +    I+ + SP W+S +V E  + Q   ++  +T        +  E+P 
Sbjct: 890 HMMAAAVADGTRAATIIEERSPSWISASVTE-PLEQVEAEAALLTEEVLEREVIAEEEPP 948

Query: 162 LLREGLPD--PSRVSSEVQQMWALTEMIRASHTSARIG 197
            + E LP+   +R  + V +     E + A+ T+  +G
Sbjct: 949 TVTEPLPENREARGDTVVSEAELTPEAVTAAETAGPLG 986


>gi|21493024 A kinase (PRKA) anchor protein 12 isoform 2 [Homo
           sapiens]
          Length = 1684

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 3/98 (3%)

Query: 102 HQMLCDMARISELRLILRQPSPLWLSFTVEELQIYQQGPKSPSVTFPKWLSHPVPCEQPA 161
           H M   +A  +    I+ + SP W+S +V E  + Q   ++  +T        +  E+P 
Sbjct: 792 HMMAAAVADGTRAATIIEERSPSWISASVTE-PLEQVEAEAALLTEEVLEREVIAEEEPP 850

Query: 162 LLREGLPD--PSRVSSEVQQMWALTEMIRASHTSARIG 197
            + E LP+   +R  + V +     E + A+ T+  +G
Sbjct: 851 TVTEPLPENREARGDTVVSEAELTPEAVTAAETAGPLG 888


>gi|9558729 golgi associated, gamma adaptin ear containing, ARF
           binding protein 1 isoform 1 [Homo sapiens]
          Length = 639

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/47 (27%), Positives = 25/47 (53%)

Query: 26  GRPGVLVIDVTFPSVAPFELQEITFKNYYTAFLSIRVRQYTSAHTPA 72
           GR  VLV+ V+  S AP  ++ I F++     + ++++  +    PA
Sbjct: 536 GRSDVLVVVVSMLSTAPQPIRNIVFQSAVPKVMKVKLQPPSGTELPA 582


>gi|48527952 golgi associated, gamma adaptin ear containing, ARF
           binding protein 1 isoform 2 [Homo sapiens]
          Length = 552

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/47 (27%), Positives = 25/47 (53%)

Query: 26  GRPGVLVIDVTFPSVAPFELQEITFKNYYTAFLSIRVRQYTSAHTPA 72
           GR  VLV+ V+  S AP  ++ I F++     + ++++  +    PA
Sbjct: 449 GRSDVLVVVVSMLSTAPQPIRNIVFQSAVPKVMKVKLQPPSGTELPA 495


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,001,829
Number of Sequences: 37866
Number of extensions: 417096
Number of successful extensions: 848
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 844
Number of HSP's gapped (non-prelim): 9
length of query: 213
length of database: 18,247,518
effective HSP length: 98
effective length of query: 115
effective length of database: 14,536,650
effective search space: 1671714750
effective search space used: 1671714750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.