Search of human proteins with 8922720

Search of human proteins with 8922720

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|8922720 transmembrane protein 30A isoform 1 [Homo sapiens]
         (361 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|8922720 transmembrane protein 30A isoform 1 [Homo sapiens]         754   0.0  
gi|221139888 transmembrane protein 30A isoform 2 [Homo sapiens]       657   0.0  
gi|63003930 transmembrane protein 30B [Homo sapiens]                  364   e-101
gi|239753641 PREDICTED: transmembrane protein 30C [Homo sapiens]       47   3e-05
gi|239748184 PREDICTED: transmembrane protein 30C [Homo sapiens]       47   3e-05
gi|239742078 PREDICTED: transmembrane protein 30C [Homo sapiens]       47   3e-05
gi|13540582 Williams-Beuren syndrome chromosome region 16 [Homo ...    30   4.4  

>gi|8922720 transmembrane protein 30A isoform 1 [Homo sapiens]
          Length = 361

 Score =  754 bits (1948), Expect = 0.0
 Identities = 361/361 (100%), Positives = 361/361 (100%)

Query: 1   MAMNYNAKDEVDGGPPCAPGGTAKTRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLI 60
           MAMNYNAKDEVDGGPPCAPGGTAKTRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLI
Sbjct: 1   MAMNYNAKDEVDGGPPCAPGGTAKTRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLI 60

Query: 61  FIPIGIGIFVTSNNIREIEIDYTGTEPSSPCNKCLSPDVTPCFCTINFTLEKSFEGNVFM 120
           FIPIGIGIFVTSNNIREIEIDYTGTEPSSPCNKCLSPDVTPCFCTINFTLEKSFEGNVFM
Sbjct: 61  FIPIGIGIFVTSNNIREIEIDYTGTEPSSPCNKCLSPDVTPCFCTINFTLEKSFEGNVFM 120

Query: 121 YYGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKECEPYRRNEDKPIAPCGAIANSMFN 180
           YYGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKECEPYRRNEDKPIAPCGAIANSMFN
Sbjct: 121 YYGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKECEPYRRNEDKPIAPCGAIANSMFN 180

Query: 181 DTLELFLIGNDSYPIPIALKKKGIAWWTDKNVKFRNPPGGDNLEERFKGTTKPVNWLKPV 240
           DTLELFLIGNDSYPIPIALKKKGIAWWTDKNVKFRNPPGGDNLEERFKGTTKPVNWLKPV
Sbjct: 181 DTLELFLIGNDSYPIPIALKKKGIAWWTDKNVKFRNPPGGDNLEERFKGTTKPVNWLKPV 240

Query: 241 YMLDSDPDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTLPAGRYSLNVTYNYP 300
           YMLDSDPDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTLPAGRYSLNVTYNYP
Sbjct: 241 YMLDSDPDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTLPAGRYSLNVTYNYP 300

Query: 301 VHYFDGRKRMILSTISWMGGKNPFLGIAYIAVGSISFLLGVVLLVINHKYRNSSNTADIT 360
           VHYFDGRKRMILSTISWMGGKNPFLGIAYIAVGSISFLLGVVLLVINHKYRNSSNTADIT
Sbjct: 301 VHYFDGRKRMILSTISWMGGKNPFLGIAYIAVGSISFLLGVVLLVINHKYRNSSNTADIT 360

Query: 361 I 361
           I
Sbjct: 361 I 361


>gi|221139888 transmembrane protein 30A isoform 2 [Homo sapiens]
          Length = 325

 Score =  657 bits (1696), Expect = 0.0
 Identities = 325/361 (90%), Positives = 325/361 (90%), Gaps = 36/361 (9%)

Query: 1   MAMNYNAKDEVDGGPPCAPGGTAKTRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLI 60
           MAMNYNAKDEVDGGPPCAPGGTAKTRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLI
Sbjct: 1   MAMNYNAKDEVDGGPPCAPGGTAKTRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLI 60

Query: 61  FIPIGIGIFVTSNNIREIEIDYTGTEPSSPCNKCLSPDVTPCFCTINFTLEKSFEGNVFM 120
           FIPIGIGIFVTSNNIREIE                                    GNVFM
Sbjct: 61  FIPIGIGIFVTSNNIREIE------------------------------------GNVFM 84

Query: 121 YYGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKECEPYRRNEDKPIAPCGAIANSMFN 180
           YYGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKECEPYRRNEDKPIAPCGAIANSMFN
Sbjct: 85  YYGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKECEPYRRNEDKPIAPCGAIANSMFN 144

Query: 181 DTLELFLIGNDSYPIPIALKKKGIAWWTDKNVKFRNPPGGDNLEERFKGTTKPVNWLKPV 240
           DTLELFLIGNDSYPIPIALKKKGIAWWTDKNVKFRNPPGGDNLEERFKGTTKPVNWLKPV
Sbjct: 145 DTLELFLIGNDSYPIPIALKKKGIAWWTDKNVKFRNPPGGDNLEERFKGTTKPVNWLKPV 204

Query: 241 YMLDSDPDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTLPAGRYSLNVTYNYP 300
           YMLDSDPDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTLPAGRYSLNVTYNYP
Sbjct: 205 YMLDSDPDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTLPAGRYSLNVTYNYP 264

Query: 301 VHYFDGRKRMILSTISWMGGKNPFLGIAYIAVGSISFLLGVVLLVINHKYRNSSNTADIT 360
           VHYFDGRKRMILSTISWMGGKNPFLGIAYIAVGSISFLLGVVLLVINHKYRNSSNTADIT
Sbjct: 265 VHYFDGRKRMILSTISWMGGKNPFLGIAYIAVGSISFLLGVVLLVINHKYRNSSNTADIT 324

Query: 361 I 361
           I
Sbjct: 325 I 325


>gi|63003930 transmembrane protein 30B [Homo sapiens]
          Length = 351

 Score =  364 bits (935), Expect = e-101
 Identities = 181/337 (53%), Positives = 234/337 (69%), Gaps = 9/337 (2%)

Query: 27  RPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLIFIPIGIGIFVTSNNIREIEIDYTGTE 86
           +PDNTAF QQRLPAWQP+L+A   LP+FF  GL FI +G+G++ +SN I+E+E DYTG  
Sbjct: 12  QPDNTAFTQQRLPAWQPLLSASIALPLFFCAGLAFIGLGLGLYYSSNGIKELEYDYTGDP 71

Query: 87  PSSPCNKCLSPDV-----TPCFCTINFTLEKSFEGNVFMYYGLSNFYQNHRRYVKSRDDS 141
            +  C+ C +         PC C   F+L + F+G V++YY L+NFYQN+RRY  SRDD+
Sbjct: 72  GTGNCSVCAAAGQGRALPPPCSCAWYFSLPELFQGPVYLYYELTNFYQNNRRYGVSRDDA 131

Query: 142 QLNGDSSALLNPSKECEPYRRNE-DKPIAPCGAIANSMFNDTLELFLIGNDSYP-IPIAL 199
           QL+G  SAL +P  EC PY+R+    PIAPCGAIANS+FND+  L+       P + + L
Sbjct: 132 QLSGLPSALRHPVNECAPYQRSAAGLPIAPCGAIANSLFNDSFSLWHQRQPGGPYVEVPL 191

Query: 200 KKKGIAWWTDKNVKFRNPP-GGDNLEERFKGTTKPVNWLKPVYMLDSDPDNNGFINEDFI 258
            + GIAWWTD +VKFRNPP    +L   F+GT  P NW +PVY L  DP+N GFIN+DF+
Sbjct: 192 DRSGIAWWTDYHVKFRNPPLVNGSLALAFQGTAPPPNWRRPVYELSPDPNNTGFINQDFV 251

Query: 259 VWMRTAALPTFRKLYRLIERKSDLHPTLPAGRYSLNVTYNYPVHYFDGRKRMILSTISWM 318
           VWMRTAALPTFRKLY  I R+ +    LP G Y +N+TYNYPV  F G K +I S+ISWM
Sbjct: 252 VWMRTAALPTFRKLYARI-RQGNYSAGLPRGAYRVNITYNYPVRAFGGHKLLIFSSISWM 310

Query: 319 GGKNPFLGIAYIAVGSISFLLGVVLLVINHKYRNSSN 355
           GGKNPFLGIAY+ VGS+  L G V+LV+  +Y++  +
Sbjct: 311 GGKNPFLGIAYLVVGSLCILTGFVMLVVYIRYQDQDD 347


>gi|239753641 PREDICTED: transmembrane protein 30C [Homo sapiens]
          Length = 113

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 24/59 (40%), Positives = 38/59 (64%)

Query: 25 TRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLIFIPIGIGIFVTSNNIREIEIDYT 83
          +R  DN+A KQQ LP  +   TA  VL +FF  G+  + +GI + +++ + +EIEI+YT
Sbjct: 10 SRLLDNSALKQQELPIHRLYFTARRVLFVFFATGIFCLCMGIILILSARSTQEIEINYT 68


>gi|239748184 PREDICTED: transmembrane protein 30C [Homo sapiens]
          Length = 113

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 24/59 (40%), Positives = 38/59 (64%)

Query: 25 TRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLIFIPIGIGIFVTSNNIREIEIDYT 83
          +R  DN+A KQQ LP  +   TA  VL +FF  G+  + +GI + +++ + +EIEI+YT
Sbjct: 10 SRLLDNSALKQQELPIHRLYFTARRVLFVFFATGIFCLCMGIILILSARSTQEIEINYT 68


>gi|239742078 PREDICTED: transmembrane protein 30C [Homo sapiens]
          Length = 113

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 24/59 (40%), Positives = 38/59 (64%)

Query: 25 TRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLIFIPIGIGIFVTSNNIREIEIDYT 83
          +R  DN+A KQQ LP  +   TA  VL +FF  G+  + +GI + +++ + +EIEI+YT
Sbjct: 10 SRLLDNSALKQQELPIHRLYFTARRVLFVFFATGIFCLCMGIILILSARSTQEIEINYT 68


>gi|13540582 Williams-Beuren syndrome chromosome region 16 [Homo
           sapiens]
          Length = 464

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 4/101 (3%)

Query: 95  LSPDVTPCFCTINFTLEKSFEGNVFMYYGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPS 154
           L   ++   C   FTL  S   +V   +G+     +   + +SR D     +   +L PS
Sbjct: 105 LDQKISSAACGYGFTLLSSKTADVTKVWGMGLNKDSQLGFHRSRKDKTRGYEY--VLEPS 162

Query: 155 KECEPYRRNEDKPI--APCGAIANSMFNDTLELFLIGNDSY 193
               P  R ++  +    CG   + +  D   +F +GN+SY
Sbjct: 163 PVSLPLDRPQETRVLQVSCGRAHSLVLTDREGVFSMGNNSY 203


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.140    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,428,316
Number of Sequences: 37866
Number of extensions: 738547
Number of successful extensions: 1472
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1460
Number of HSP's gapped (non-prelim): 8
length of query: 361
length of database: 18,247,518
effective HSP length: 104
effective length of query: 257
effective length of database: 14,309,454
effective search space: 3677529678
effective search space used: 3677529678
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.