Guide to the Human Genome
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Search of human proteins with 89061728

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|89061728 PREDICTED: similar to signal recognition particle
54kDa [Homo sapiens]
         (168 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|89061728 PREDICTED: similar to signal recognition particle 54...   330   3e-91
gi|226371618 signal recognition particle 54kDa isoform 2 [Homo s...   323   6e-89
gi|4507215 signal recognition particle 54kDa isoform 1 [Homo sap...   323   6e-89
gi|23308697 signal recognition particle receptor [Homo sapiens]        59   2e-09
gi|116734857 amylo-1,6-glucosidase, 4-alpha-glucanotransferase i...    28   3.7  
gi|116734851 amylo-1,6-glucosidase, 4-alpha-glucanotransferase i...    28   3.7  
gi|116734853 amylo-1,6-glucosidase, 4-alpha-glucanotransferase i...    28   3.7  
gi|116734849 amylo-1,6-glucosidase, 4-alpha-glucanotransferase i...    28   3.7  
gi|116734860 amylo-1,6-glucosidase, 4-alpha-glucanotransferase i...    28   3.7  
gi|116734847 amylo-1,6-glucosidase, 4-alpha-glucanotransferase i...    28   3.7  
gi|226958663 nucleoporin 210kDa-like isoform 2 [Homo sapiens]          27   8.3  
gi|117414168 nucleoporin 210kDa-like isoform 1 [Homo sapiens]          27   8.3  
gi|154350236 hypothetical protein LOC56204 [Homo sapiens]              27   8.3  
gi|61966763 hypothetical protein LOC390667 [Homo sapiens]              27   8.3  

>gi|89061728 PREDICTED: similar to signal recognition particle 54kDa
           [Homo sapiens]
          Length = 168

 Score =  330 bits (847), Expect = 3e-91
 Identities = 168/168 (100%), Positives = 168/168 (100%)

Query: 1   MLYSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIV 60
           MLYSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIV
Sbjct: 1   MLYSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIV 60

Query: 61  YVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEH 120
           YVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEH
Sbjct: 61  YVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEH 120

Query: 121 IDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGI 168
           IDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGI
Sbjct: 121 IDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGI 168


>gi|226371618 signal recognition particle 54kDa isoform 2 [Homo
           sapiens]
          Length = 455

 Score =  323 bits (827), Expect = 6e-89
 Identities = 164/164 (100%), Positives = 164/164 (100%)

Query: 4   SYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVM 63
           SYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVM
Sbjct: 113 SYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVM 172

Query: 64  DASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDD 123
           DASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDD
Sbjct: 173 DASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDD 232

Query: 124 FEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHG 167
           FEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHG
Sbjct: 233 FEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHG 276


>gi|4507215 signal recognition particle 54kDa isoform 1 [Homo
           sapiens]
          Length = 504

 Score =  323 bits (827), Expect = 6e-89
 Identities = 164/164 (100%), Positives = 164/164 (100%)

Query: 4   SYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVM 63
           SYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVM
Sbjct: 162 SYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVM 221

Query: 64  DASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDD 123
           DASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDD
Sbjct: 222 DASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDD 281

Query: 124 FEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHG 167
           FEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHG
Sbjct: 282 FEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHG 325


>gi|23308697 signal recognition particle receptor [Homo sapiens]
          Length = 638

 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 11/140 (7%)

Query: 9   DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIG 68
           D   IA E +   +N+ F++++VDT+GR +    L   + ++     PD +++V +A +G
Sbjct: 497 DAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVG 556

Query: 69  QACEAQAKAFKDKVD----------VASVIVTKLDG-HAKGGGALSAVAATKSPIIFIGT 117
                Q   F   +           +  +++TK D    K G A+S    T  PI+F+GT
Sbjct: 557 NEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGT 616

Query: 118 GEHIDDFEPFKTQPFISKLL 137
           G+   D      +  ++ L+
Sbjct: 617 GQTYCDLRSLNAKAVVAALM 636


>gi|116734857 amylo-1,6-glucosidase, 4-alpha-glucanotransferase
           isoform 1 [Homo sapiens]
          Length = 1532

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 92  LDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGD 141
           L G+ K GG    V     PI+ +G   H+   +    Q F++K LG  D
Sbjct: 96  LQGNEKSGGGYIVV----DPILRVGADNHVLPLDCVTLQTFLAKCLGPFD 141


>gi|116734851 amylo-1,6-glucosidase, 4-alpha-glucanotransferase
           isoform 1 [Homo sapiens]
          Length = 1532

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 92  LDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGD 141
           L G+ K GG    V     PI+ +G   H+   +    Q F++K LG  D
Sbjct: 96  LQGNEKSGGGYIVV----DPILRVGADNHVLPLDCVTLQTFLAKCLGPFD 141


>gi|116734853 amylo-1,6-glucosidase, 4-alpha-glucanotransferase
           isoform 3 [Homo sapiens]
          Length = 1516

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 92  LDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGD 141
           L G+ K GG    V     PI+ +G   H+   +    Q F++K LG  D
Sbjct: 80  LQGNEKSGGGYIVV----DPILRVGADNHVLPLDCVTLQTFLAKCLGPFD 125


>gi|116734849 amylo-1,6-glucosidase, 4-alpha-glucanotransferase
           isoform 2 [Homo sapiens]
          Length = 1515

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 92  LDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGD 141
           L G+ K GG    V     PI+ +G   H+   +    Q F++K LG  D
Sbjct: 79  LQGNEKSGGGYIVV----DPILRVGADNHVLPLDCVTLQTFLAKCLGPFD 124


>gi|116734860 amylo-1,6-glucosidase, 4-alpha-glucanotransferase
           isoform 1 [Homo sapiens]
          Length = 1532

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 92  LDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGD 141
           L G+ K GG    V     PI+ +G   H+   +    Q F++K LG  D
Sbjct: 96  LQGNEKSGGGYIVV----DPILRVGADNHVLPLDCVTLQTFLAKCLGPFD 141


>gi|116734847 amylo-1,6-glucosidase, 4-alpha-glucanotransferase
           isoform 1 [Homo sapiens]
          Length = 1532

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 92  LDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGD 141
           L G+ K GG    V     PI+ +G   H+   +    Q F++K LG  D
Sbjct: 96  LQGNEKSGGGYIVV----DPILRVGADNHVLPLDCVTLQTFLAKCLGPFD 141


>gi|226958663 nucleoporin 210kDa-like isoform 2 [Homo sapiens]
          Length = 1736

 Score = 26.9 bits (58), Expect = 8.3
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 18/121 (14%)

Query: 37   HKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA-QAKAFKD---KVDVASVIVT-- 90
            H +   + E  L + + ++ D  V V    +G +    Q K F++   K+ +AS IVT  
Sbjct: 977  HLRVSDIQELELDLIDKVEIDKTVLVTVRVLGSSKRPFQNKYFRNMELKLQLASAIVTLT 1036

Query: 91   ---KLDGHAK---------GGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLG 138
               + D +++         G   L A+A  K    +  T  HI+ F PF+  P    L+ 
Sbjct: 1037 PMEQQDEYSENYILRATTIGQTTLVAIAKDKMGRKYTSTPRHIEVFPPFRLLPEKMTLIP 1096

Query: 139  M 139
            M
Sbjct: 1097 M 1097


>gi|117414168 nucleoporin 210kDa-like isoform 1 [Homo sapiens]
          Length = 1888

 Score = 26.9 bits (58), Expect = 8.3
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 18/121 (14%)

Query: 37   HKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA-QAKAFKD---KVDVASVIVT-- 90
            H +   + E  L + + ++ D  V V    +G +    Q K F++   K+ +AS IVT  
Sbjct: 977  HLRVSDIQELELDLIDKVEIDKTVLVTVRVLGSSKRPFQNKYFRNMELKLQLASAIVTLT 1036

Query: 91   ---KLDGHAK---------GGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLG 138
               + D +++         G   L A+A  K    +  T  HI+ F PF+  P    L+ 
Sbjct: 1037 PMEQQDEYSENYILRATTIGQTTLVAIAKDKMGRKYTSTPRHIEVFPPFRLLPEKMTLIP 1096

Query: 139  M 139
            M
Sbjct: 1097 M 1097


>gi|154350236 hypothetical protein LOC56204 [Homo sapiens]
          Length = 1076

 Score = 26.9 bits (58), Expect = 8.3
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 95  HAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELK 153
           HAK G +    AA K+  ++ GTG   D      +Q  I    G+GDI+     V  LK
Sbjct: 282 HAKSGPSPEYTAAVKNIKLYPGTGSKSDH---GTSQANILGFSGIGDIKSQETSVRTLK 337


>gi|61966763 hypothetical protein LOC390667 [Homo sapiens]
          Length = 473

 Score = 26.9 bits (58), Expect = 8.3
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 3/78 (3%)

Query: 57  DNIVYVMDASIGQACEAQA---KAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPII 113
           D  +  +D ++G+  + +A   KA K + D     + +L+G     GA  A    + P+ 
Sbjct: 114 DTRLRALDLTLGERSQQRARERKAHKAQRDALQDSLARLEGLVHSQGARLAALEGRLPVA 173

Query: 114 FIGTGEHIDDFEPFKTQP 131
             GT        P  TQP
Sbjct: 174 HPGTAALGPALVPTPTQP 191


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.136    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,599,025
Number of Sequences: 37866
Number of extensions: 214313
Number of successful extensions: 512
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 14
length of query: 168
length of database: 18,247,518
effective HSP length: 95
effective length of query: 73
effective length of database: 14,650,248
effective search space: 1069468104
effective search space used: 1069468104
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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