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Search of human proteins with 89061728
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|89061728 PREDICTED: similar to signal recognition particle
54kDa [Homo sapiens]
(168 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|89061728 PREDICTED: similar to signal recognition particle 54... 330 3e-91
gi|226371618 signal recognition particle 54kDa isoform 2 [Homo s... 323 6e-89
gi|4507215 signal recognition particle 54kDa isoform 1 [Homo sap... 323 6e-89
gi|23308697 signal recognition particle receptor [Homo sapiens] 59 2e-09
gi|116734857 amylo-1,6-glucosidase, 4-alpha-glucanotransferase i... 28 3.7
gi|116734851 amylo-1,6-glucosidase, 4-alpha-glucanotransferase i... 28 3.7
gi|116734853 amylo-1,6-glucosidase, 4-alpha-glucanotransferase i... 28 3.7
gi|116734849 amylo-1,6-glucosidase, 4-alpha-glucanotransferase i... 28 3.7
gi|116734860 amylo-1,6-glucosidase, 4-alpha-glucanotransferase i... 28 3.7
gi|116734847 amylo-1,6-glucosidase, 4-alpha-glucanotransferase i... 28 3.7
gi|226958663 nucleoporin 210kDa-like isoform 2 [Homo sapiens] 27 8.3
gi|117414168 nucleoporin 210kDa-like isoform 1 [Homo sapiens] 27 8.3
gi|154350236 hypothetical protein LOC56204 [Homo sapiens] 27 8.3
gi|61966763 hypothetical protein LOC390667 [Homo sapiens] 27 8.3
>gi|89061728 PREDICTED: similar to signal recognition particle 54kDa
[Homo sapiens]
Length = 168
Score = 330 bits (847), Expect = 3e-91
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MLYSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIV 60
MLYSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIV
Sbjct: 1 MLYSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIV 60
Query: 61 YVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEH 120
YVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEH
Sbjct: 61 YVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEH 120
Query: 121 IDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGI 168
IDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGI
Sbjct: 121 IDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGI 168
>gi|226371618 signal recognition particle 54kDa isoform 2 [Homo
sapiens]
Length = 455
Score = 323 bits (827), Expect = 6e-89
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 4 SYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVM 63
SYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVM
Sbjct: 113 SYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVM 172
Query: 64 DASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDD 123
DASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDD
Sbjct: 173 DASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDD 232
Query: 124 FEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHG 167
FEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHG
Sbjct: 233 FEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHG 276
>gi|4507215 signal recognition particle 54kDa isoform 1 [Homo
sapiens]
Length = 504
Score = 323 bits (827), Expect = 6e-89
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 4 SYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVM 63
SYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVM
Sbjct: 162 SYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVM 221
Query: 64 DASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDD 123
DASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDD
Sbjct: 222 DASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDD 281
Query: 124 FEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHG 167
FEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHG
Sbjct: 282 FEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHG 325
>gi|23308697 signal recognition particle receptor [Homo sapiens]
Length = 638
Score = 59.3 bits (142), Expect = 2e-09
Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 11/140 (7%)
Query: 9 DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIG 68
D IA E + +N+ F++++VDT+GR + L + ++ PD +++V +A +G
Sbjct: 497 DAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVG 556
Query: 69 QACEAQAKAFKDKVD----------VASVIVTKLDG-HAKGGGALSAVAATKSPIIFIGT 117
Q F + + +++TK D K G A+S T PI+F+GT
Sbjct: 557 NEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGT 616
Query: 118 GEHIDDFEPFKTQPFISKLL 137
G+ D + ++ L+
Sbjct: 617 GQTYCDLRSLNAKAVVAALM 636
>gi|116734857 amylo-1,6-glucosidase, 4-alpha-glucanotransferase
isoform 1 [Homo sapiens]
Length = 1532
Score = 28.1 bits (61), Expect = 3.7
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 92 LDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGD 141
L G+ K GG V PI+ +G H+ + Q F++K LG D
Sbjct: 96 LQGNEKSGGGYIVV----DPILRVGADNHVLPLDCVTLQTFLAKCLGPFD 141
>gi|116734851 amylo-1,6-glucosidase, 4-alpha-glucanotransferase
isoform 1 [Homo sapiens]
Length = 1532
Score = 28.1 bits (61), Expect = 3.7
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 92 LDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGD 141
L G+ K GG V PI+ +G H+ + Q F++K LG D
Sbjct: 96 LQGNEKSGGGYIVV----DPILRVGADNHVLPLDCVTLQTFLAKCLGPFD 141
>gi|116734853 amylo-1,6-glucosidase, 4-alpha-glucanotransferase
isoform 3 [Homo sapiens]
Length = 1516
Score = 28.1 bits (61), Expect = 3.7
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 92 LDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGD 141
L G+ K GG V PI+ +G H+ + Q F++K LG D
Sbjct: 80 LQGNEKSGGGYIVV----DPILRVGADNHVLPLDCVTLQTFLAKCLGPFD 125
>gi|116734849 amylo-1,6-glucosidase, 4-alpha-glucanotransferase
isoform 2 [Homo sapiens]
Length = 1515
Score = 28.1 bits (61), Expect = 3.7
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 92 LDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGD 141
L G+ K GG V PI+ +G H+ + Q F++K LG D
Sbjct: 79 LQGNEKSGGGYIVV----DPILRVGADNHVLPLDCVTLQTFLAKCLGPFD 124
>gi|116734860 amylo-1,6-glucosidase, 4-alpha-glucanotransferase
isoform 1 [Homo sapiens]
Length = 1532
Score = 28.1 bits (61), Expect = 3.7
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 92 LDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGD 141
L G+ K GG V PI+ +G H+ + Q F++K LG D
Sbjct: 96 LQGNEKSGGGYIVV----DPILRVGADNHVLPLDCVTLQTFLAKCLGPFD 141
>gi|116734847 amylo-1,6-glucosidase, 4-alpha-glucanotransferase
isoform 1 [Homo sapiens]
Length = 1532
Score = 28.1 bits (61), Expect = 3.7
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 92 LDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGD 141
L G+ K GG V PI+ +G H+ + Q F++K LG D
Sbjct: 96 LQGNEKSGGGYIVV----DPILRVGADNHVLPLDCVTLQTFLAKCLGPFD 141
>gi|226958663 nucleoporin 210kDa-like isoform 2 [Homo sapiens]
Length = 1736
Score = 26.9 bits (58), Expect = 8.3
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 18/121 (14%)
Query: 37 HKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA-QAKAFKD---KVDVASVIVT-- 90
H + + E L + + ++ D V V +G + Q K F++ K+ +AS IVT
Sbjct: 977 HLRVSDIQELELDLIDKVEIDKTVLVTVRVLGSSKRPFQNKYFRNMELKLQLASAIVTLT 1036
Query: 91 ---KLDGHAK---------GGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLG 138
+ D +++ G L A+A K + T HI+ F PF+ P L+
Sbjct: 1037 PMEQQDEYSENYILRATTIGQTTLVAIAKDKMGRKYTSTPRHIEVFPPFRLLPEKMTLIP 1096
Query: 139 M 139
M
Sbjct: 1097 M 1097
>gi|117414168 nucleoporin 210kDa-like isoform 1 [Homo sapiens]
Length = 1888
Score = 26.9 bits (58), Expect = 8.3
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 18/121 (14%)
Query: 37 HKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA-QAKAFKD---KVDVASVIVT-- 90
H + + E L + + ++ D V V +G + Q K F++ K+ +AS IVT
Sbjct: 977 HLRVSDIQELELDLIDKVEIDKTVLVTVRVLGSSKRPFQNKYFRNMELKLQLASAIVTLT 1036
Query: 91 ---KLDGHAK---------GGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLG 138
+ D +++ G L A+A K + T HI+ F PF+ P L+
Sbjct: 1037 PMEQQDEYSENYILRATTIGQTTLVAIAKDKMGRKYTSTPRHIEVFPPFRLLPEKMTLIP 1096
Query: 139 M 139
M
Sbjct: 1097 M 1097
>gi|154350236 hypothetical protein LOC56204 [Homo sapiens]
Length = 1076
Score = 26.9 bits (58), Expect = 8.3
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 95 HAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELK 153
HAK G + AA K+ ++ GTG D +Q I G+GDI+ V LK
Sbjct: 282 HAKSGPSPEYTAAVKNIKLYPGTGSKSDH---GTSQANILGFSGIGDIKSQETSVRTLK 337
>gi|61966763 hypothetical protein LOC390667 [Homo sapiens]
Length = 473
Score = 26.9 bits (58), Expect = 8.3
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 57 DNIVYVMDASIGQACEAQA---KAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPII 113
D + +D ++G+ + +A KA K + D + +L+G GA A + P+
Sbjct: 114 DTRLRALDLTLGERSQQRARERKAHKAQRDALQDSLARLEGLVHSQGARLAALEGRLPVA 173
Query: 114 FIGTGEHIDDFEPFKTQP 131
GT P TQP
Sbjct: 174 HPGTAALGPALVPTPTQP 191
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.136 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,599,025
Number of Sequences: 37866
Number of extensions: 214313
Number of successful extensions: 512
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 14
length of query: 168
length of database: 18,247,518
effective HSP length: 95
effective length of query: 73
effective length of database: 14,650,248
effective search space: 1069468104
effective search space used: 1069468104
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.