Search of human proteins with 83582809

Search of human proteins with 83582809

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|83582809 integrator complex subunit 10 [Homo sapiens]
         (710 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|83582809 integrator complex subunit 10 [Homo sapiens]             1435   0.0  
gi|213021162 hypothetical protein LOC163882 isoform 2 [Homo sapi...    34   0.54 
gi|213021160 hypothetical protein LOC163882 isoform 1 [Homo sapi...    34   0.54 
gi|221219020 NYD-SP11 protein [Homo sapiens]                           33   0.70 
gi|66730481 neuregulin 3 [Homo sapiens]                                30   5.9  
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap...    30   7.7  
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap...    30   7.7  

>gi|83582809 integrator complex subunit 10 [Homo sapiens]
          Length = 710

 Score = 1435 bits (3715), Expect = 0.0
 Identities = 710/710 (100%), Positives = 710/710 (100%)

Query: 1   MSAQGDCEFLVQRARELVPQDLWAAKAWLITARSLYPADFNIQYEMYTIERNAERTATAG 60
           MSAQGDCEFLVQRARELVPQDLWAAKAWLITARSLYPADFNIQYEMYTIERNAERTATAG
Sbjct: 1   MSAQGDCEFLVQRARELVPQDLWAAKAWLITARSLYPADFNIQYEMYTIERNAERTATAG 60

Query: 61  RLLYDMFVNFPDQPVVWREISIITSALRNDSQDKQTQFLRSLFETLPGRVQCEMLLKVTE 120
           RLLYDMFVNFPDQPVVWREISIITSALRNDSQDKQTQFLRSLFETLPGRVQCEMLLKVTE
Sbjct: 61  RLLYDMFVNFPDQPVVWREISIITSALRNDSQDKQTQFLRSLFETLPGRVQCEMLLKVTE 120

Query: 121 QCFNTLERSEMLLLLLRRFPETVVQHGVGLGEALLEAETIEEQESPVNCFRKLFVCDVLP 180
           QCFNTLERSEMLLLLLRRFPETVVQHGVGLGEALLEAETIEEQESPVNCFRKLFVCDVLP
Sbjct: 121 QCFNTLERSEMLLLLLRRFPETVVQHGVGLGEALLEAETIEEQESPVNCFRKLFVCDVLP 180

Query: 181 LIINNHDVRLPANLLYKYLNKAAEFYINYVTRSTQIENQHQGAQDTSDLMSPSKRSSQKY 240
           LIINNHDVRLPANLLYKYLNKAAEFYINYVTRSTQIENQHQGAQDTSDLMSPSKRSSQKY
Sbjct: 181 LIINNHDVRLPANLLYKYLNKAAEFYINYVTRSTQIENQHQGAQDTSDLMSPSKRSSQKY 240

Query: 241 IIEGLTEKSSQIVDPWERLFKILNVVGMRCEWQMDKGRRSYGDILHRMKDLCRYMNNFDS 300
           IIEGLTEKSSQIVDPWERLFKILNVVGMRCEWQMDKGRRSYGDILHRMKDLCRYMNNFDS
Sbjct: 241 IIEGLTEKSSQIVDPWERLFKILNVVGMRCEWQMDKGRRSYGDILHRMKDLCRYMNNFDS 300

Query: 301 EAHAKYKNQVVYSTMLVFFKNAFQYVNSIQPSLFQGPNAPSQVPLVLLEDVSNVYGDVEI 360
           EAHAKYKNQVVYSTMLVFFKNAFQYVNSIQPSLFQGPNAPSQVPLVLLEDVSNVYGDVEI
Sbjct: 301 EAHAKYKNQVVYSTMLVFFKNAFQYVNSIQPSLFQGPNAPSQVPLVLLEDVSNVYGDVEI 360

Query: 361 DRNKHIHKKRKLAEGREKTMSSDDEDCSAKGRNRHIVVNKAELANSTEVLESFKLARESW 420
           DRNKHIHKKRKLAEGREKTMSSDDEDCSAKGRNRHIVVNKAELANSTEVLESFKLARESW
Sbjct: 361 DRNKHIHKKRKLAEGREKTMSSDDEDCSAKGRNRHIVVNKAELANSTEVLESFKLARESW 420

Query: 421 ELLYSLEFLDKEFTRICLAWKTDTWLWLRIFLTDMIIYQGQYKKAIASLHHLAALQGSIS 480
           ELLYSLEFLDKEFTRICLAWKTDTWLWLRIFLTDMIIYQGQYKKAIASLHHLAALQGSIS
Sbjct: 421 ELLYSLEFLDKEFTRICLAWKTDTWLWLRIFLTDMIIYQGQYKKAIASLHHLAALQGSIS 480

Query: 481 QPQITGQGTLEHQRALIQLATCHFALGEYRMTCEKVLDLMCYMVLPIQDGGKSQEEPSKV 540
           QPQITGQGTLEHQRALIQLATCHFALGEYRMTCEKVLDLMCYMVLPIQDGGKSQEEPSKV
Sbjct: 481 QPQITGQGTLEHQRALIQLATCHFALGEYRMTCEKVLDLMCYMVLPIQDGGKSQEEPSKV 540

Query: 541 KPKFRKGSDLKLLPCTSKAIMPYCLHLMLACFKLRAFTDNRDDMALGHVIVLLQQEWPRG 600
           KPKFRKGSDLKLLPCTSKAIMPYCLHLMLACFKLRAFTDNRDDMALGHVIVLLQQEWPRG
Sbjct: 541 KPKFRKGSDLKLLPCTSKAIMPYCLHLMLACFKLRAFTDNRDDMALGHVIVLLQQEWPRG 600

Query: 601 ENLFLKAVNKICQQGNFQYENFFNYVTNIDMLEEFAYLRTQEGGKIHLELLPNQGMLIKH 660
           ENLFLKAVNKICQQGNFQYENFFNYVTNIDMLEEFAYLRTQEGGKIHLELLPNQGMLIKH
Sbjct: 601 ENLFLKAVNKICQQGNFQYENFFNYVTNIDMLEEFAYLRTQEGGKIHLELLPNQGMLIKH 660

Query: 661 HTVTRGITKGVKEDFRLAMERQVSRCGENLMVVLHRFCINEKILLLQTLT 710
           HTVTRGITKGVKEDFRLAMERQVSRCGENLMVVLHRFCINEKILLLQTLT
Sbjct: 661 HTVTRGITKGVKEDFRLAMERQVSRCGENLMVVLHRFCINEKILLLQTLT 710


>gi|213021162 hypothetical protein LOC163882 isoform 2 [Homo
           sapiens]
          Length = 616

 Score = 33.9 bits (76), Expect = 0.54
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 11/86 (12%)

Query: 471 HLAALQGSISQPQITGQGTLEHQRALIQLATCHFALGE--YRMTCEKVLDLMCYMVLPIQ 528
           HL +   ++ +PQ++ Q +L +  +     +C  A GE      CE   D   ++     
Sbjct: 50  HLTSSDSAMGKPQVSEQDSLNNNESCT--LSCEVAAGENLQNTLCEASRDEQAFL----- 102

Query: 529 DGGKSQEEPSKVKPKFRKGSDLKLLP 554
             GK ++ P K  P+ +KG+  K+ P
Sbjct: 103 --GKDKKIPGKRSPRSKKGTAKKIPP 126


>gi|213021160 hypothetical protein LOC163882 isoform 1 [Homo
           sapiens]
          Length = 725

 Score = 33.9 bits (76), Expect = 0.54
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 11/86 (12%)

Query: 471 HLAALQGSISQPQITGQGTLEHQRALIQLATCHFALGE--YRMTCEKVLDLMCYMVLPIQ 528
           HL +   ++ +PQ++ Q +L +  +     +C  A GE      CE   D   ++     
Sbjct: 50  HLTSSDSAMGKPQVSEQDSLNNNESCT--LSCEVAAGENLQNTLCEASRDEQAFL----- 102

Query: 529 DGGKSQEEPSKVKPKFRKGSDLKLLP 554
             GK ++ P K  P+ +KG+  K+ P
Sbjct: 103 --GKDKKIPGKRSPRSKKGTAKKIPP 126


>gi|221219020 NYD-SP11 protein [Homo sapiens]
          Length = 2873

 Score = 33.5 bits (75), Expect = 0.70
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 362  RNKHIHKKRKLAEGREKTMSSDDEDCSAKGRNRHIVVNKAELANSTEVL--ESFKLARES 419
            R + I KK KLA+ RE+ ++S +E      +N+ I+  K  LA   + L  E  KLA+  
Sbjct: 1802 REQLIEKKMKLAQKRERWINSMEE----LTKNKMILYQKKNLAQEKKNLAQEKEKLAQRK 1857

Query: 420  WELLYSLEFL 429
              LLY+ E L
Sbjct: 1858 ENLLYNKERL 1867


>gi|66730481 neuregulin 3 [Homo sapiens]
          Length = 696

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 1/122 (0%)

Query: 110 VQCEMLLKVTEQCFNTLERSEMLLLLLRRFPETVVQHGVGLGEALLEAETIEEQESPVNC 169
           +  ++  + T   FN+LE+ +++     R     +   VGL E  L+   I E +S   C
Sbjct: 542 INMQLPSRETNPYFNSLEQKDLVGYSSTRASSVPIIPSVGLEETCLQMPGISEVKSIKWC 601

Query: 170 FRKLFVCDVLPLIINNHDVRLPANLLYKYLNKAAEFYINYVTRSTQIENQHQGAQDTSDL 229
            +  +  DV+ + I   D  +      K L +  +  I  +T + + E+    + +T D 
Sbjct: 602 -KNSYSADVVNVSIPVSDCLIAEQQEVKILLETVQEQIRILTDARRSEDYELASVETEDS 660

Query: 230 MS 231
            S
Sbjct: 661 AS 662


>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo
           sapiens]
          Length = 2462

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 194 LLYKYLNKAAEFYINYVTRS------TQIENQHQGAQDTSDLMSPSKRSSQKYIIEGLTE 247
           +LY YL K  E Y + V RS      +Q + Q Q  Q       P  RSSQ+   E   E
Sbjct: 467 VLYYYLTKKNENYKSLVRRSYRRRGKSQQQQQQQQQQQQQQQQQPMPRSSQEEKDEKEKE 526

Query: 248 KSSQ 251
           K ++
Sbjct: 527 KEAE 530


>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo
           sapiens]
          Length = 2524

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 194 LLYKYLNKAAEFYINYVTRS------TQIENQHQGAQDTSDLMSPSKRSSQKYIIEGLTE 247
           +LY YL K  E Y + V RS      +Q + Q Q  Q       P  RSSQ+   E   E
Sbjct: 467 VLYYYLTKKNENYKSLVRRSYRRRGKSQQQQQQQQQQQQQQQQQPMPRSSQEEKDEKEKE 526

Query: 248 KSSQ 251
           K ++
Sbjct: 527 KEAE 530


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,271,668
Number of Sequences: 37866
Number of extensions: 1072565
Number of successful extensions: 2442
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2439
Number of HSP's gapped (non-prelim): 9
length of query: 710
length of database: 18,247,518
effective HSP length: 109
effective length of query: 601
effective length of database: 14,120,124
effective search space: 8486194524
effective search space used: 8486194524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.