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Search of human proteins with 78711822
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|78711822 succinate dehydrogenase complex, subunit C isoform
3 precursor [Homo sapiens]
(135 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|78711822 succinate dehydrogenase complex, subunit C isoform 3... 276 5e-75
gi|155369255 hypothetical protein LOC642502 [Homo sapiens] 276 5e-75
gi|4506863 succinate dehydrogenase complex, subunit C isoform 1 ... 258 8e-70
gi|78711824 succinate dehydrogenase complex, subunit C isoform 4... 222 8e-59
gi|78711820 succinate dehydrogenase complex, subunit C isoform 2... 84 3e-17
gi|239749866 PREDICTED: similar to succinate dehydrogenase compl... 74 3e-14
gi|239744168 PREDICTED: similar to succinate dehydrogenase compl... 74 3e-14
gi|45505180 per1-like domain containing 1 [Homo sapiens] 30 0.78
gi|52218852 olfactory receptor, family 10, subfamily K, member 1... 28 2.9
>gi|78711822 succinate dehydrogenase complex, subunit C isoform 3
precursor [Homo sapiens]
Length = 135
Score = 276 bits (705), Expect = 5e-75
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRNWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPG 60
MAALLLRHVGRHCLRAHFSPQLCIRNWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPG
Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRNWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPG 60
Query: 61 NFESYLELVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVV 120
NFESYLELVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVV
Sbjct: 61 NFESYLELVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVV 120
Query: 121 VLVLTVLSSMGLAAM 135
VLVLTVLSSMGLAAM
Sbjct: 121 VLVLTVLSSMGLAAM 135
>gi|155369255 hypothetical protein LOC642502 [Homo sapiens]
Length = 135
Score = 276 bits (705), Expect = 5e-75
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRNWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPG 60
MAALLLRHVGRHCLRAHFSPQLCIRNWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPG
Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRNWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPG 60
Query: 61 NFESYLELVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVV 120
NFESYLELVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVV
Sbjct: 61 NFESYLELVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVV 120
Query: 121 VLVLTVLSSMGLAAM 135
VLVLTVLSSMGLAAM
Sbjct: 121 VLVLTVLSSMGLAAM 135
>gi|4506863 succinate dehydrogenase complex, subunit C isoform 1
precursor [Homo sapiens]
Length = 169
Score = 258 bits (660), Expect = 8e-70
Identities = 135/169 (79%), Positives = 135/169 (79%), Gaps = 34/169 (20%)
Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRN---------------------------------- 26
MAALLLRHVGRHCLRAHFSPQLCIRN
Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60
Query: 27 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL 86
WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL
Sbjct: 61 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL 120
Query: 87 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM 135
VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM
Sbjct: 121 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM 169
>gi|78711824 succinate dehydrogenase complex, subunit C isoform 4
precursor [Homo sapiens]
Length = 116
Score = 222 bits (565), Expect = 8e-59
Identities = 109/110 (99%), Positives = 110/110 (100%)
Query: 26 NWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFA 85
+WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFA
Sbjct: 7 SWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFA 66
Query: 86 LVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM 135
LVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM
Sbjct: 67 LVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM 116
>gi|78711820 succinate dehydrogenase complex, subunit C isoform 2
precursor [Homo sapiens]
Length = 150
Score = 84.0 bits (206), Expect = 3e-17
Identities = 47/82 (57%), Positives = 47/82 (57%), Gaps = 34/82 (41%)
Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRN---------------------------------- 26
MAALLLRHVGRHCLRAHFSPQLCIRN
Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60
Query: 27 WSLPMAMSICHRGTGIALSAGV 48
WSLPMAMSICHRGTGIALSA V
Sbjct: 61 WSLPMAMSICHRGTGIALSADV 82
>gi|239749866 PREDICTED: similar to succinate dehydrogenase
complex, subunit C [Homo sapiens]
Length = 150
Score = 74.3 bits (181), Expect = 3e-14
Identities = 42/82 (51%), Positives = 43/82 (52%), Gaps = 34/82 (41%)
Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRN---------------------------------- 26
MAALLLRHVGRHCLRAHFSPQLCIRN
Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTGKQEMERFWNKNTGLNRPVSPHVTIYS 60
Query: 27 WSLPMAMSICHRGTGIALSAGV 48
WSLPMAM+ICH TG AL A V
Sbjct: 61 WSLPMAMAICHHDTGTALRADV 82
>gi|239744168 PREDICTED: similar to succinate dehydrogenase
complex, subunit C [Homo sapiens]
Length = 150
Score = 74.3 bits (181), Expect = 3e-14
Identities = 42/82 (51%), Positives = 43/82 (52%), Gaps = 34/82 (41%)
Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRN---------------------------------- 26
MAALLLRHVGRHCLRAHFSPQLCIRN
Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTGKQEMERFWNKNTGLNRPVSPHVTIYS 60
Query: 27 WSLPMAMSICHRGTGIALSAGV 48
WSLPMAM+ICH TG AL A V
Sbjct: 61 WSLPMAMAICHHDTGTALRADV 82
>gi|45505180 per1-like domain containing 1 [Homo sapiens]
Length = 320
Score = 29.6 bits (65), Expect = 0.78
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 36 CHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFALVFPLMYHTW 95
C R G+ A VS F LL+ SYL L++ G L+ LV
Sbjct: 184 CVRTVGLQHPAVVSAFRALLLLMLTVHVSYLSLIR-FDYGYNLVANVAIGLV-------- 234
Query: 96 NGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGL 132
N + L W L ++P + + VVVL+L LS + L
Sbjct: 235 NVVWWLAWCLWNQRRLPHVRKCVVVVLLLQGLSLLEL 271
>gi|52218852 olfactory receptor, family 10, subfamily K, member 1
[Homo sapiens]
Length = 313
Score = 27.7 bits (60), Expect = 2.9
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 68 LVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVL 127
L+ + C + +LVF L +H+ N + H D+ LK+ + SG LV+ +L
Sbjct: 144 LMAAACACGFTVSLVTTSLVFHLPFHSSNQLHHFFCDISPVLKLASQH-SGFSQLVIFML 202
Query: 128 SSMGL 132
L
Sbjct: 203 GVFAL 207
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.330 0.141 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,174,778
Number of Sequences: 37866
Number of extensions: 210727
Number of successful extensions: 388
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 376
Number of HSP's gapped (non-prelim): 13
length of query: 135
length of database: 18,247,518
effective HSP length: 91
effective length of query: 44
effective length of database: 14,801,712
effective search space: 651275328
effective search space used: 651275328
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.