Search of human proteins with 7705933

Search of human proteins with 7705933

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|7705933 chemokine-like factor isoform c [Homo sapiens]
         (67 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|7705933 chemokine-like factor isoform c [Homo sapiens]             142   7e-35
gi|32307154 chemokine-like factor isoform b [Homo sapiens]            125   7e-30
gi|32307156 chemokine-like factor isoform d [Homo sapiens]            117   2e-27
gi|8393581 chemokine-like factor isoform a [Homo sapiens]              87   2e-18
gi|93141024 chemokine-like factor isoform e [Homo sapiens]             60   4e-10

>gi|7705933 chemokine-like factor isoform c [Homo sapiens]
          Length = 67

 Score =  142 bits (357), Expect = 7e-35
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 1  MDNVQPKIKHRPFCFSVKGHVKMLRLVFALVTAVCCLADGALIYRKLLFNPSGPYQKKPV 60
          MDNVQPKIKHRPFCFSVKGHVKMLRLVFALVTAVCCLADGALIYRKLLFNPSGPYQKKPV
Sbjct: 1  MDNVQPKIKHRPFCFSVKGHVKMLRLVFALVTAVCCLADGALIYRKLLFNPSGPYQKKPV 60

Query: 61 HEKKEVL 67
          HEKKEVL
Sbjct: 61 HEKKEVL 67


>gi|32307154 chemokine-like factor isoform b [Homo sapiens]
          Length = 99

 Score =  125 bits (314), Expect = 7e-30
 Identities = 67/99 (67%), Positives = 67/99 (67%), Gaps = 32/99 (32%)

Query: 1  MDNVQPKIKHRPFCFSVKGHVKMLRL--------------------------------VF 28
          MDNVQPKIKHRPFCFSVKGHVKMLRL                                VF
Sbjct: 1  MDNVQPKIKHRPFCFSVKGHVKMLRLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGVF 60

Query: 29 ALVTAVCCLADGALIYRKLLFNPSGPYQKKPVHEKKEVL 67
          ALVTAVCCLADGALIYRKLLFNPSGPYQKKPVHEKKEVL
Sbjct: 61 ALVTAVCCLADGALIYRKLLFNPSGPYQKKPVHEKKEVL 99


>gi|32307156 chemokine-like factor isoform d [Homo sapiens]
          Length = 120

 Score =  117 bits (293), Expect = 2e-27
 Identities = 67/120 (55%), Positives = 67/120 (55%), Gaps = 53/120 (44%)

Query: 1   MDNVQPKIKHRPFCFSVKGHVKMLRL---------------------------------- 26
           MDNVQPKIKHRPFCFSVKGHVKMLRL                                  
Sbjct: 1   MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI 60

Query: 27  -------------------VFALVTAVCCLADGALIYRKLLFNPSGPYQKKPVHEKKEVL 67
                              VFALVTAVCCLADGALIYRKLLFNPSGPYQKKPVHEKKEVL
Sbjct: 61  LLYVLRLDRLMKWLFWPLLVFALVTAVCCLADGALIYRKLLFNPSGPYQKKPVHEKKEVL 120


>gi|8393581 chemokine-like factor isoform a [Homo sapiens]
          Length = 152

 Score = 87.4 bits (215), Expect = 2e-18
 Identities = 41/41 (100%), Positives = 41/41 (100%)

Query: 27  VFALVTAVCCLADGALIYRKLLFNPSGPYQKKPVHEKKEVL 67
           VFALVTAVCCLADGALIYRKLLFNPSGPYQKKPVHEKKEVL
Sbjct: 112 VFALVTAVCCLADGALIYRKLLFNPSGPYQKKPVHEKKEVL 152



 Score = 60.1 bits (144), Expect = 4e-10
 Identities = 26/32 (81%), Positives = 28/32 (87%)

Query: 1  MDNVQPKIKHRPFCFSVKGHVKMLRLVFALVT 32
          MDNVQPKIKHRPFCFSVKGHVKMLRL   + +
Sbjct: 1  MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTS 32


>gi|93141024 chemokine-like factor isoform e [Homo sapiens]
          Length = 113

 Score = 60.1 bits (144), Expect = 4e-10
 Identities = 26/32 (81%), Positives = 28/32 (87%)

Query: 1  MDNVQPKIKHRPFCFSVKGHVKMLRLVFALVT 32
          MDNVQPKIKHRPFCFSVKGHVKMLRL   + +
Sbjct: 1  MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTS 32


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.328    0.142    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,765,359
Number of Sequences: 37866
Number of extensions: 81859
Number of successful extensions: 180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 172
Number of HSP's gapped (non-prelim): 8
length of query: 67
length of database: 18,247,518
effective HSP length: 40
effective length of query: 27
effective length of database: 16,732,878
effective search space: 451787706
effective search space used: 451787706
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.