Search of human proteins with 7705805

Search of human proteins with 7705805

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|7705805 mitochondrial ribosomal protein S2 [Homo sapiens]
         (296 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|7705805 mitochondrial ribosomal protein S2 [Homo sapiens]          605   e-173
gi|194688135 high-mobility group box 2 [Homo sapiens]                  32   0.67 
gi|194688133 high-mobility group box 2 [Homo sapiens]                  32   0.67 
gi|11321591 high-mobility group box 2 [Homo sapiens]                   32   0.67 
gi|188536053 carboxypeptidase A5 isoform 1 [Homo sapiens]              30   2.5  
gi|188536051 carboxypeptidase A5 isoform 1 [Homo sapiens]              30   2.5  
gi|66346704 NMDA receptor regulated 2 isoform b [Homo sapiens]         29   4.3  
gi|37202123 NMDA receptor regulated 2 isoform a [Homo sapiens]         29   4.3  
gi|188536055 carboxypeptidase A5 isoform 2 [Homo sapiens]              28   9.7  

>gi|7705805 mitochondrial ribosomal protein S2 [Homo sapiens]
          Length = 296

 Score =  605 bits (1559), Expect = e-173
 Identities = 296/296 (100%), Positives = 296/296 (100%)

Query: 1   MATSSAALPRILGAGARAPSRWLGFLGKATPRPARPSRRTLGSATALMIRESEDSTDFND 60
           MATSSAALPRILGAGARAPSRWLGFLGKATPRPARPSRRTLGSATALMIRESEDSTDFND
Sbjct: 1   MATSSAALPRILGAGARAPSRWLGFLGKATPRPARPSRRTLGSATALMIRESEDSTDFND 60

Query: 61  KILNEPLKHSDFFNVKELFSVRSLFDARVHLGHKAGCRHRFMEPYIFGSRLDHDIIDLEQ 120
           KILNEPLKHSDFFNVKELFSVRSLFDARVHLGHKAGCRHRFMEPYIFGSRLDHDIIDLEQ
Sbjct: 61  KILNEPLKHSDFFNVKELFSVRSLFDARVHLGHKAGCRHRFMEPYIFGSRLDHDIIDLEQ 120

Query: 121 TATHLQLALNFTAHMAYRKGIILFISRNRQFSYLIENMARDCGEYAHTRYFRGGMLTNAR 180
           TATHLQLALNFTAHMAYRKGIILFISRNRQFSYLIENMARDCGEYAHTRYFRGGMLTNAR
Sbjct: 121 TATHLQLALNFTAHMAYRKGIILFISRNRQFSYLIENMARDCGEYAHTRYFRGGMLTNAR 180

Query: 181 LLFGPTVRLPDLIIFLHTLNNIFEPHVAVRDAAKMNIPTVGIVDTNCNPCLITYPVPGND 240
           LLFGPTVRLPDLIIFLHTLNNIFEPHVAVRDAAKMNIPTVGIVDTNCNPCLITYPVPGND
Sbjct: 181 LLFGPTVRLPDLIIFLHTLNNIFEPHVAVRDAAKMNIPTVGIVDTNCNPCLITYPVPGND 240

Query: 241 DSPLAVHLYCRLFQTAITRAKEKRQQVEALYRLQGQKEPGDQGPAHPPGADMSHSL 296
           DSPLAVHLYCRLFQTAITRAKEKRQQVEALYRLQGQKEPGDQGPAHPPGADMSHSL
Sbjct: 241 DSPLAVHLYCRLFQTAITRAKEKRQQVEALYRLQGQKEPGDQGPAHPPGADMSHSL 296


>gi|194688135 high-mobility group box 2 [Homo sapiens]
          Length = 209

 Score = 32.0 bits (71), Expect = 0.67
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 253 FQTAITRAKEKRQQVEALYRLQGQKEPGDQGPAHPPGA 290
           ++    + KEK ++  A YR +G+ E G +GP  P G+
Sbjct: 144 YEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGS 181


>gi|194688133 high-mobility group box 2 [Homo sapiens]
          Length = 209

 Score = 32.0 bits (71), Expect = 0.67
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 253 FQTAITRAKEKRQQVEALYRLQGQKEPGDQGPAHPPGA 290
           ++    + KEK ++  A YR +G+ E G +GP  P G+
Sbjct: 144 YEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGS 181


>gi|11321591 high-mobility group box 2 [Homo sapiens]
          Length = 209

 Score = 32.0 bits (71), Expect = 0.67
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 253 FQTAITRAKEKRQQVEALYRLQGQKEPGDQGPAHPPGA 290
           ++    + KEK ++  A YR +G+ E G +GP  P G+
Sbjct: 144 YEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGS 181


>gi|188536053 carboxypeptidase A5 isoform 1 [Homo sapiens]
          Length = 436

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 37/137 (27%)

Query: 176 LTNARLLFGPTVRLPDLIIFLHTLNNIFEPHVAVR--------DAAKMNIPTVGIVDTNC 227
           + NA  +F   V  PD   F H++N ++  + ++R        D  +      G   +N 
Sbjct: 226 ILNAMDIFIELVTNPDGFAFTHSMNRLWRKNKSIRPGIFCIGVDLNRNWKSGFGGNGSNS 285

Query: 228 NPCLITYPVP------------------GNDDSPLAVHLYCRLFQTAITRAKE------- 262
           NPC  TY  P                  GN  + +++H Y ++      R  E       
Sbjct: 286 NPCSETYHGPSPQSEPEVAAIVNFITAHGNFKALISIHSYSQMLMYPYGRLLEPVSNQRE 345

Query: 263 ----KRQQVEALYRLQG 275
                +  VEALY++ G
Sbjct: 346 LYDLAKDAVEALYKVHG 362


>gi|188536051 carboxypeptidase A5 isoform 1 [Homo sapiens]
          Length = 436

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 37/137 (27%)

Query: 176 LTNARLLFGPTVRLPDLIIFLHTLNNIFEPHVAVR--------DAAKMNIPTVGIVDTNC 227
           + NA  +F   V  PD   F H++N ++  + ++R        D  +      G   +N 
Sbjct: 226 ILNAMDIFIELVTNPDGFAFTHSMNRLWRKNKSIRPGIFCIGVDLNRNWKSGFGGNGSNS 285

Query: 228 NPCLITYPVP------------------GNDDSPLAVHLYCRLFQTAITRAKE------- 262
           NPC  TY  P                  GN  + +++H Y ++      R  E       
Sbjct: 286 NPCSETYHGPSPQSEPEVAAIVNFITAHGNFKALISIHSYSQMLMYPYGRLLEPVSNQRE 345

Query: 263 ----KRQQVEALYRLQG 275
                +  VEALY++ G
Sbjct: 346 LYDLAKDAVEALYKVHG 362


>gi|66346704 NMDA receptor regulated 2 isoform b [Homo sapiens]
          Length = 845

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 52 SEDSTDFNDKILNEPL----KHSDFFNVKELFSVRSLFDARVHLGHK 94
          S+D+  F +KIL   +    K+S+F+ + E+ S+   F  RV +G K
Sbjct: 31 SDDARLFTEKILRACIEQVKKYSEFYTLHEVTSLMGFFPFRVEMGLK 77


>gi|37202123 NMDA receptor regulated 2 isoform a [Homo sapiens]
          Length = 982

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 52  SEDSTDFNDKILNEPL----KHSDFFNVKELFSVRSLFDARVHLGHK 94
           S+D+  F +KIL   +    K+S+F+ + E+ S+   F  RV +G K
Sbjct: 168 SDDARLFTEKILRACIEQVKKYSEFYTLHEVTSLMGFFPFRVEMGLK 214


>gi|188536055 carboxypeptidase A5 isoform 2 [Homo sapiens]
          Length = 403

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 8/76 (10%)

Query: 176 LTNARLLFGPTVRLPDLIIFLHTLNNIFEPHVAVR--------DAAKMNIPTVGIVDTNC 227
           + NA  +F   V  PD   F H++N ++  + ++R        D  +      G   +N 
Sbjct: 226 ILNAMDIFIELVTNPDGFAFTHSMNRLWRKNKSIRPGIFCIGVDLNRNWKSGFGGNGSNS 285

Query: 228 NPCLITYPVPGNDDSP 243
           NPC  TY  P     P
Sbjct: 286 NPCSETYHGPSPQSEP 301


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,883,400
Number of Sequences: 37866
Number of extensions: 517240
Number of successful extensions: 2317
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2313
Number of HSP's gapped (non-prelim): 9
length of query: 296
length of database: 18,247,518
effective HSP length: 102
effective length of query: 194
effective length of database: 14,385,186
effective search space: 2790726084
effective search space used: 2790726084
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.