Search of human proteins with 76159293

Search of human proteins with 76159293

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|76159293 thioesterase superfamily member 4 [Homo sapiens]
         (240 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|76159293 thioesterase superfamily member 4 [Homo sapiens]          494   e-140
gi|32698978 thioesterase superfamily member 5 [Homo sapiens]          159   2e-39
gi|50086624 integrator complex subunit 4 [Homo sapiens]                32   0.38 
gi|231567183 acyl-CoA thioesterase 13 isoform 2 [Homo sapiens]         31   0.84 
gi|8923812 acyl-CoA thioesterase 13 isoform 1 [Homo sapiens]           31   0.84 
gi|5453621 solute carrier family 35 (CMP-sialic acid transporter...    31   0.84 
gi|116008458 CDC14 homolog B isoform 3 [Homo sapiens]                  28   5.4  
gi|4502699 CDC14 homolog B isoform 1 [Homo sapiens]                    28   5.4  
gi|15451936 CDC14 homolog B isoform 2 [Homo sapiens]                   28   5.4  
gi|167857790 orosomucoid 1 precursor [Homo sapiens]                    28   9.2  
gi|4505529 orosomucoid 2 [Homo sapiens]                                28   9.2  
gi|68509270 transcriptional adaptor 2-like isoform a [Homo sapiens]    28   9.2  
gi|68509268 transcriptional adaptor 2-like isoform b [Homo sapiens]    28   9.2  

>gi|76159293 thioesterase superfamily member 4 [Homo sapiens]
          Length = 240

 Score =  494 bits (1272), Expect = e-140
 Identities = 240/240 (100%), Positives = 240/240 (100%)

Query: 1   MLRSCAARLRTLGALCLPPVGRRLPGSEPRPELRSFSSEEVILKDCSVPNPSWNKDLRLL 60
           MLRSCAARLRTLGALCLPPVGRRLPGSEPRPELRSFSSEEVILKDCSVPNPSWNKDLRLL
Sbjct: 1   MLRSCAARLRTLGALCLPPVGRRLPGSEPRPELRSFSSEEVILKDCSVPNPSWNKDLRLL 60

Query: 61  FDQFMKKCEDGSWKRLPSYKRTPTEWIQDFKTHFLDPKLMKEEQMSQAQLFTRSFDDGLG 120
           FDQFMKKCEDGSWKRLPSYKRTPTEWIQDFKTHFLDPKLMKEEQMSQAQLFTRSFDDGLG
Sbjct: 61  FDQFMKKCEDGSWKRLPSYKRTPTEWIQDFKTHFLDPKLMKEEQMSQAQLFTRSFDDGLG 120

Query: 121 FEYVMFYNDIEKRMVCLFQGGPYLEGPPGFIHGGAIATMIDATVGMCAMMAGGIVMTANL 180
           FEYVMFYNDIEKRMVCLFQGGPYLEGPPGFIHGGAIATMIDATVGMCAMMAGGIVMTANL
Sbjct: 121 FEYVMFYNDIEKRMVCLFQGGPYLEGPPGFIHGGAIATMIDATVGMCAMMAGGIVMTANL 180

Query: 181 NINYKRPIPLCSVVMINSQLDKVEGRKFFVSCNVQSVDEKTLYSEATSLFIKLNPAKSLT 240
           NINYKRPIPLCSVVMINSQLDKVEGRKFFVSCNVQSVDEKTLYSEATSLFIKLNPAKSLT
Sbjct: 181 NINYKRPIPLCSVVMINSQLDKVEGRKFFVSCNVQSVDEKTLYSEATSLFIKLNPAKSLT 240


>gi|32698978 thioesterase superfamily member 5 [Homo sapiens]
          Length = 247

 Score =  159 bits (402), Expect = 2e-39
 Identities = 92/243 (37%), Positives = 142/243 (58%), Gaps = 14/243 (5%)

Query: 1   MLRSC---AARL-RTLGALCLPPVGRRLP-----GSEPRPELRSFSSEEVILKDCSVPNP 51
           M+R C   AARL    G L  P +  RL      GS        F  E+  LKD ++PN 
Sbjct: 1   MIRRCFQVAARLGHHRGLLEAPRILPRLNPASAFGSSTDSMFSRFLPEKTDLKDYALPNA 60

Query: 52  SWNKDLRLLFDQFMKKCEDGSWKRLPSYKRTPTEWIQDFKTHFLDPKLMKEEQMSQAQLF 111
           SW  D+  L+ +F++K +   W +LPS+K    + I+  K   L   L         ++F
Sbjct: 61  SWCSDMLSLYQEFLEKTKSSGWIKLPSFKSN-RDHIRGLK---LPSGLAVSSDKGDCRIF 116

Query: 112 TRSFD-DGLGFEYVMFYNDIEKRMVCLFQGGPYLEGPPGFIHGGAIATMIDATVGMCAMM 170
           TR    +G GFEYV+F+   +K+ VCLFQ G YLEGPPGF HGG++A M+D T    A +
Sbjct: 117 TRCIQVEGQGFEYVIFFQPTQKKSVCLFQPGSYLEGPPGFAHGGSLAAMMDETFSKTAFL 176

Query: 171 AGGIVMTANLNINYKRPIPLCSVVMINSQLDKVEGRKFFVSCNVQSVDEKTLYSEATSLF 230
           AG  + T +LNI +K  IP+ S+V+++ ++DK+E +K ++SC   S D++T+Y++++ +F
Sbjct: 177 AGEGLFTLSLNIRFKNLIPVDSLVVMDVEVDKIEDQKLYMSCIAHSRDQQTVYAKSSGVF 236

Query: 231 IKL 233
           ++L
Sbjct: 237 LQL 239


>gi|50086624 integrator complex subunit 4 [Homo sapiens]
          Length = 963

 Score = 32.3 bits (72), Expect = 0.38
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 6/59 (10%)

Query: 48  VPNPSWNKDLRLLFDQFMKKC---EDGSW-KRLPSYKRTPTEWIQDFKTHFLDPKLMKE 102
           VP PS N+++RL+ D F K C    DGSW  R+ + K   +  ++   +HFL+  L K+
Sbjct: 268 VPIPSSNEEIRLVDDAFGKICHMVSDGSWVVRVQAAKLLGS--MEQVSSHFLEQTLDKK 324


>gi|231567183 acyl-CoA thioesterase 13 isoform 2 [Homo sapiens]
          Length = 117

 Score = 31.2 bits (69), Expect = 0.84
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 149 GFIHGGAIATMID--ATVGMCAMMAGGIVMTANLNINYKRPIPLCSVVMINSQLDK 202
           G +HGG  AT++D  +T+ +     G   ++ ++NI Y  P  L   ++I + + K
Sbjct: 30  GTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLK 85


>gi|8923812 acyl-CoA thioesterase 13 isoform 1 [Homo sapiens]
          Length = 140

 Score = 31.2 bits (69), Expect = 0.84
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 149 GFIHGGAIATMID--ATVGMCAMMAGGIVMTANLNINYKRPIPLCSVVMINSQLDK 202
           G +HGG  AT++D  +T+ +     G   ++ ++NI Y  P  L   ++I + + K
Sbjct: 53  GTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLK 108


>gi|5453621 solute carrier family 35 (CMP-sialic acid transporter),
           member A1 [Homo sapiens]
          Length = 337

 Score = 31.2 bits (69), Expect = 0.84
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 6/85 (7%)

Query: 155 AIATMIDATVGMCAMMAGGIVMTANLNINYKRPIP---LCSVVMINSQLDKVEGRKFFVS 211
           ++ +++ A     A +A   +  A   + Y+  IP   LC+V+M+N  L K++    F+ 
Sbjct: 92  SVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNRTLSKLQWVSVFML 151

Query: 212 C-NVQSVDEKTLYSEATSLFIKLNP 235
           C  V  V  K   ++AT + ++ NP
Sbjct: 152 CAGVTLVQWKP--AQATKVVVEQNP 174


>gi|116008458 CDC14 homolog B isoform 3 [Homo sapiens]
          Length = 461

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 54  NKDLRLLF-DQFMKKCEDGSWKRLPS--YKRTPTEWIQDFKTHFLDPKLMKEEQMSQAQL 110
           N DL  +  D+F+  C   S  RL S  ++ +P  +IQ FK H +   +   ++M  A+ 
Sbjct: 176 NGDLNWIIPDRFIAFCGPHSRARLESGYHQHSPETYIQYFKNHNVTTIIRLNKRMYDAKR 235

Query: 111 FT 112
           FT
Sbjct: 236 FT 237


>gi|4502699 CDC14 homolog B isoform 1 [Homo sapiens]
          Length = 459

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 54  NKDLRLLF-DQFMKKCEDGSWKRLPS--YKRTPTEWIQDFKTHFLDPKLMKEEQMSQAQL 110
           N DL  +  D+F+  C   S  RL S  ++ +P  +IQ FK H +   +   ++M  A+ 
Sbjct: 213 NGDLNWIIPDRFIAFCGPHSRARLESGYHQHSPETYIQYFKNHNVTTIIRLNKRMYDAKR 272

Query: 111 FT 112
           FT
Sbjct: 273 FT 274


>gi|15451936 CDC14 homolog B isoform 2 [Homo sapiens]
          Length = 498

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 54  NKDLRLLF-DQFMKKCEDGSWKRLPS--YKRTPTEWIQDFKTHFLDPKLMKEEQMSQAQL 110
           N DL  +  D+F+  C   S  RL S  ++ +P  +IQ FK H +   +   ++M  A+ 
Sbjct: 213 NGDLNWIIPDRFIAFCGPHSRARLESGYHQHSPETYIQYFKNHNVTTIIRLNKRMYDAKR 272

Query: 111 FT 112
           FT
Sbjct: 273 FT 274


>gi|167857790 orosomucoid 1 precursor [Homo sapiens]
          Length = 201

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 188 IPLCS----VVMINSQLDKVEGRKFFVSCNVQSVDEKTLYSEATSLFIKLNPAKS 238
           IPLC+    V + N+ LD++ G+ F+++   ++ +      E  + F    P K+
Sbjct: 20  IPLCANLVPVPITNATLDRITGKWFYIASAFRNEEYNKSVQEIQATFFYFTPNKT 74


>gi|4505529 orosomucoid 2 [Homo sapiens]
          Length = 201

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 188 IPLCS----VVMINSQLDKVEGRKFFVSCNVQSVDEKTLYSEATSLFIKLNPAKS 238
           IPLC+    V + N+ LD++ G+ F+++   ++ +      E  + F    P K+
Sbjct: 20  IPLCANLVPVPITNATLDRITGKWFYIASAFRNEEYNKSVQEIQATFFYFTPNKT 74


>gi|68509270 transcriptional adaptor 2-like isoform a [Homo sapiens]
          Length = 443

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 40  EVILKDCSVPNPSWNKDLRLLFDQFMKKCEDGSWKRLPSYKRTPT--EWIQDFKTHFLDP 97
           E++  D  V +PSW     +   + +  C  G+W+ + +   T T  E  + +  HF++ 
Sbjct: 62  EIMTSDFPVLDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKHFINN 121

Query: 98  KLMKEEQMSQAQ 109
            L     ++  Q
Sbjct: 122 PLFASTLLNLKQ 133


>gi|68509268 transcriptional adaptor 2-like isoform b [Homo sapiens]
          Length = 305

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 40  EVILKDCSVPNPSWNKDLRLLFDQFMKKCEDGSWKRLPSYKRTPT--EWIQDFKTHFLDP 97
           E++  D  V +PSW     +   + +  C  G+W+ + +   T T  E  + +  HF++ 
Sbjct: 62  EIMTSDFPVLDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKHFINN 121

Query: 98  KLMKEEQMSQAQ 109
            L     ++  Q
Sbjct: 122 PLFASTLLNLKQ 133


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,409,253
Number of Sequences: 37866
Number of extensions: 493216
Number of successful extensions: 991
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 988
Number of HSP's gapped (non-prelim): 13
length of query: 240
length of database: 18,247,518
effective HSP length: 99
effective length of query: 141
effective length of database: 14,498,784
effective search space: 2044328544
effective search space used: 2044328544
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.