Search of human proteins with 75709189

Search of human proteins with 75709189

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|75709189 cleavage stimulation factor subunit 3 isoform 3
[Homo sapiens]
         (44 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|75709189 cleavage stimulation factor subunit 3 isoform 3 [Hom...    91   2e-19
gi|75709187 cleavage stimulation factor subunit 3 isoform 2 [Hom...    89   6e-19
gi|4557495 cleavage stimulation factor subunit 3 isoform 1 [Homo...    89   6e-19
gi|21070997 stromal interaction molecule 1 precursor [Homo sapiens]    27   3.5  
gi|42560248 POU domain, class 5, transcription factor 1 isoform ...    27   3.5  
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]           26   6.0  
gi|156938331 PRP39 pre-mRNA processing factor 39 homolog [Homo s...    26   7.8  

>gi|75709189 cleavage stimulation factor subunit 3 isoform 3 [Homo
          sapiens]
          Length = 44

 Score = 90.9 bits (224), Expect = 2e-19
 Identities = 44/44 (100%), Positives = 44/44 (100%)

Query: 1  MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQV 44
          MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQV
Sbjct: 1  MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQV 44


>gi|75709187 cleavage stimulation factor subunit 3 isoform 2 [Homo
          sapiens]
          Length = 103

 Score = 89.4 bits (220), Expect = 6e-19
 Identities = 43/43 (100%), Positives = 43/43 (100%)

Query: 1  MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQ 43
          MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQ
Sbjct: 1  MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQ 43


>gi|4557495 cleavage stimulation factor subunit 3 isoform 1 [Homo
          sapiens]
          Length = 717

 Score = 89.4 bits (220), Expect = 6e-19
 Identities = 43/43 (100%), Positives = 43/43 (100%)

Query: 1  MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQ 43
          MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQ
Sbjct: 1  MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQ 43


>gi|21070997 stromal interaction molecule 1 precursor [Homo sapiens]
          Length = 685

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)

Query: 8   EQAAEYVPEKVKKAEKKLEEN-----PYDLDAWSILIREAQV 44
           E+  E V E ++KAEK+LE +     P  L  W  L  E +V
Sbjct: 318 EEELEQVREALRKAEKELESHSSWYAPEALQKWLQLTHEVEV 359


>gi|42560248 POU domain, class 5, transcription factor 1 isoform 1
           [Homo sapiens]
          Length = 360

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 2   SGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQ 43
           + DGA+ +     P  VK  ++KLE+NP +      L +E +
Sbjct: 106 NSDGASPEPCTVTPGAVKLEKEKLEQNPEESQDIKALQKELE 147


>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
          Length = 2426

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 11/20 (55%), Positives = 16/20 (80%)

Query: 21   AEKKLEENPYDLDAWSILIR 40
            A+K+L EN +DL+A S+L R
Sbjct: 2233 AQKRLSENAFDLEAMSMLNR 2252


>gi|156938331 PRP39 pre-mRNA processing factor 39 homolog [Homo
           sapiens]
          Length = 669

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 7   TEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIR 40
           TE  A + PE  +K  K +E NP D   W  L++
Sbjct: 71  TETEANFPPE-YEKFWKTVENNPQDFTGWVYLLQ 103


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.305    0.125    0.342 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,660,513
Number of Sequences: 37866
Number of extensions: 43394
Number of successful extensions: 179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 7
length of query: 44
length of database: 18,247,518
effective HSP length: 18
effective length of query: 26
effective length of database: 17,565,930
effective search space: 456714180
effective search space used: 456714180
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.