Search of human proteins with 7110633

Search of human proteins with 7110633

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|7110633 chromosome 20 open reading frame 103 precursor [Homo
sapiens]
         (280 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|7110633 chromosome 20 open reading frame 103 precursor [Homo ...   560   e-160
gi|169790833 lysosomal-associated membrane protein 2 isoform C p...    41   0.001
gi|112380628 lysosomal-associated membrane protein 1 [Homo sapiens]    40   0.002
gi|7669503 lysosomal-associated membrane protein 2 isoform B pre...    39   0.005
gi|4504957 lysosomal-associated membrane protein 2 isoform A pre...    38   0.011
gi|91199550 CD68 antigen isoform B [Homo sapiens]                      37   0.015
gi|91199548 CD68 antigen isoform A [Homo sapiens]                      37   0.015
gi|157738685 G protein-coupled receptor 103 [Homo sapiens]             32   0.62 
gi|33519481 neural cell adhesion molecule 2 precursor [Homo sapi...    29   5.2  

>gi|7110633 chromosome 20 open reading frame 103 precursor [Homo
           sapiens]
          Length = 280

 Score =  560 bits (1442), Expect = e-160
 Identities = 280/280 (100%), Positives = 280/280 (100%)

Query: 1   MDLQGRGVPSIDRLRVLLMLFHTMAQIMAEQEVENLSGLSTNPEKDIFVVRENGTTCLMA 60
           MDLQGRGVPSIDRLRVLLMLFHTMAQIMAEQEVENLSGLSTNPEKDIFVVRENGTTCLMA
Sbjct: 1   MDLQGRGVPSIDRLRVLLMLFHTMAQIMAEQEVENLSGLSTNPEKDIFVVRENGTTCLMA 60

Query: 61  EFAAKFIVPYDVWASNYVDLITEQADIALTRGAEVKGRCGHSQSELQVFWVDRAYALKML 120
           EFAAKFIVPYDVWASNYVDLITEQADIALTRGAEVKGRCGHSQSELQVFWVDRAYALKML
Sbjct: 61  EFAAKFIVPYDVWASNYVDLITEQADIALTRGAEVKGRCGHSQSELQVFWVDRAYALKML 120

Query: 121 FVKESHNMSKGPEATWRLSKVQFVYDSSEKTHFKDAVSAGKHTANSHHLSALVTPAGKSY 180
           FVKESHNMSKGPEATWRLSKVQFVYDSSEKTHFKDAVSAGKHTANSHHLSALVTPAGKSY
Sbjct: 121 FVKESHNMSKGPEATWRLSKVQFVYDSSEKTHFKDAVSAGKHTANSHHLSALVTPAGKSY 180

Query: 181 ECQAQQTISLASSDPQKTVTMILSAVHIQPFDIISDFVFSEEHKCPVDEREQLEETLPLI 240
           ECQAQQTISLASSDPQKTVTMILSAVHIQPFDIISDFVFSEEHKCPVDEREQLEETLPLI
Sbjct: 181 ECQAQQTISLASSDPQKTVTMILSAVHIQPFDIISDFVFSEEHKCPVDEREQLEETLPLI 240

Query: 241 LGLILGLVIMVTLAIYHVHHKMTANQVQIPRDRSQYKHMG 280
           LGLILGLVIMVTLAIYHVHHKMTANQVQIPRDRSQYKHMG
Sbjct: 241 LGLILGLVIMVTLAIYHVHHKMTANQVQIPRDRSQYKHMG 280


>gi|169790833 lysosomal-associated membrane protein 2 isoform C
           precursor [Homo sapiens]
          Length = 411

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 8/103 (7%)

Query: 166 SHHLSALVTPAGKSYECQAQQTISLASSDPQKTVTMILSAVHIQPFDIISDFVFSEEHKC 225
           +++LS    P G SY C  +QT+S++ +    T  +      +QPF+ ++   +S   +C
Sbjct: 315 NNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDL-----RVQPFN-VTQGKYSTAEEC 368

Query: 226 PVDEREQLEETLPLILGLILGLVIMVTLAIYHVHHKMTANQVQ 268
             D    L   +P+ +G+ LG +I+V    Y +  + +    Q
Sbjct: 369 SAD--SDLNFLIPVAVGVALGFLIIVVFISYMIGRRKSRTGYQ 409



 Score = 30.0 bits (66), Expect = 2.4
 Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 15/134 (11%)

Query: 56  TCLMAEFAAKFIVPYDVWASNYVDLITEQADIALTRGAEVKGRCGHSQSELQV-FWVDRA 114
           TCL A++   F V Y+     Y  +           G+     CG  Q+  ++       
Sbjct: 40  TCLYAKWQMNFTVRYETTNKTYKTVTISDHGTVTYNGSI----CGDDQNGPKIAVQFGPG 95

Query: 115 YALKMLFVKESHNMSKGPEATWRLSKVQFVYDSSEKTHFKDAVSAGKHTANSHHLSALVT 174
           ++    F K +        +T+ +  V F Y++ + T F DA   G  T +   L A+  
Sbjct: 96  FSWIANFTKAA--------STYSIDSVSFSYNTGDNTTFPDAEDKGILTVD--ELLAIRI 145

Query: 175 PAGKSYECQAQQTI 188
           P    + C +  T+
Sbjct: 146 PLNDLFRCNSLSTL 159


>gi|112380628 lysosomal-associated membrane protein 1 [Homo sapiens]
          Length = 417

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 51/199 (25%), Positives = 82/199 (41%), Gaps = 29/199 (14%)

Query: 36  LSGLSTNPEKDIFVVRE-NGTTCLMAEFAAKFIVPYDVWA--SNYVDLITEQADIALTRG 92
           L GL       +F+V+  NGT C+MA F+A F V YD  +   N    +   A + L R 
Sbjct: 19  LLGLMHCASAAMFMVKNGNGTACIMANFSAAFSVNYDTKSGPKNMTFDLPSDATVVLNRS 78

Query: 93  AEVKGRCG--HSQSELQVFWVDRAYALKMLFVKESHNMSKGPEATWRLSKVQFVYDSSEK 150
           +     CG  ++     V    R + L + F + +   S        +  + FVY+ S+ 
Sbjct: 79  S-----CGKENTSDPSLVIAFGRGHTLTLNFTRNATRYS--------VQLMSFVYNLSDT 125

Query: 151 THFKDAVSAGKHTANSHHLSALVTPAGKSYECQAQQTISLASSDPQKTVTMILSAVHIQP 210
             F +A S    T  S  ++ +     K Y C +   + +        VT+ L    IQ 
Sbjct: 126 HLFPNASSKEIKTVES--ITDIRADIDKKYRCVSGTQVHM------NNVTVTLHDATIQA 177

Query: 211 FDIISDFVFSE-EHKCPVD 228
           +  +S+  FS  E +C  D
Sbjct: 178 Y--LSNSSFSRGETRCEQD 194



 Score = 33.9 bits (76), Expect = 0.16
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 169 LSALVTPAGKSYECQAQQTISLASSDPQKTVTMILSAVHIQPFDIISDFVFSEEHKCPVD 228
           L AL    G SY+C A++ + +      K  ++ +  V +Q F  +    F    +C +D
Sbjct: 325 LRALQATVGNSYKCNAEEHVRVT-----KAFSVNIFKVWVQAFK-VEGGQFGSVEECLLD 378

Query: 229 EREQLEETLPLILGLILGLVIMVTLAIYHVHHK 261
           E   L   +P+ +G  L  ++++ L  Y V  K
Sbjct: 379 ENSML---IPIAVGGALAGLVLIVLIAYLVGRK 408


>gi|7669503 lysosomal-associated membrane protein 2 isoform B
           precursor [Homo sapiens]
          Length = 410

 Score = 38.9 bits (89), Expect = 0.005
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 166 SHHLSALVTPAGKSYECQAQQTISLASSDPQKTVTMILSAVHIQPFDIISDFVFSEEHKC 225
           +++LS    P G SY C  +QT+S++ +    T  +      +QPF+ ++   +S   +C
Sbjct: 315 NNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDL-----RVQPFN-VTQGKYSTAQEC 368

Query: 226 PVDEREQLEETLPLILGL-ILGLVIMVTLA 254
            +D+   L   +P+I+G  + GL+I++ +A
Sbjct: 369 SLDDDTIL---IPIIVGAGLSGLIIVIVIA 395



 Score = 30.0 bits (66), Expect = 2.4
 Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 15/134 (11%)

Query: 56  TCLMAEFAAKFIVPYDVWASNYVDLITEQADIALTRGAEVKGRCGHSQSELQV-FWVDRA 114
           TCL A++   F V Y+     Y  +           G+     CG  Q+  ++       
Sbjct: 40  TCLYAKWQMNFTVRYETTNKTYKTVTISDHGTVTYNGSI----CGDDQNGPKIAVQFGPG 95

Query: 115 YALKMLFVKESHNMSKGPEATWRLSKVQFVYDSSEKTHFKDAVSAGKHTANSHHLSALVT 174
           ++    F K +        +T+ +  V F Y++ + T F DA   G  T +   L A+  
Sbjct: 96  FSWIANFTKAA--------STYSIDSVSFSYNTGDNTTFPDAEDKGILTVD--ELLAIRI 145

Query: 175 PAGKSYECQAQQTI 188
           P    + C +  T+
Sbjct: 146 PLNDLFRCNSLSTL 159


>gi|4504957 lysosomal-associated membrane protein 2 isoform A
           precursor [Homo sapiens]
          Length = 410

 Score = 37.7 bits (86), Expect = 0.011
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 12/98 (12%)

Query: 166 SHHLSALVTPAGKSYECQAQQTISLASSDPQKTVTMILSAVHIQPFDIISDFVFSEEHKC 225
           +++LS    P G SY C  +QT+S++ +    T  +      +QPF+ ++   +S    C
Sbjct: 315 NNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDL-----RVQPFN-VTQGKYSTAQDC 368

Query: 226 PVDEREQLEETLPLILGLILGLVIMVTLAIYHV---HH 260
             D+   L   +P+ +G  L  V+++ L  Y +   HH
Sbjct: 369 SADDDNFL---VPIAVGAALAGVLILVLLAYFIGLKHH 403



 Score = 30.0 bits (66), Expect = 2.4
 Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 15/134 (11%)

Query: 56  TCLMAEFAAKFIVPYDVWASNYVDLITEQADIALTRGAEVKGRCGHSQSELQV-FWVDRA 114
           TCL A++   F V Y+     Y  +           G+     CG  Q+  ++       
Sbjct: 40  TCLYAKWQMNFTVRYETTNKTYKTVTISDHGTVTYNGSI----CGDDQNGPKIAVQFGPG 95

Query: 115 YALKMLFVKESHNMSKGPEATWRLSKVQFVYDSSEKTHFKDAVSAGKHTANSHHLSALVT 174
           ++    F K +        +T+ +  V F Y++ + T F DA   G  T +   L A+  
Sbjct: 96  FSWIANFTKAA--------STYSIDSVSFSYNTGDNTTFPDAEDKGILTVD--ELLAIRI 145

Query: 175 PAGKSYECQAQQTI 188
           P    + C +  T+
Sbjct: 146 PLNDLFRCNSLSTL 159


>gi|91199550 CD68 antigen isoform B [Homo sapiens]
          Length = 327

 Score = 37.4 bits (85), Expect = 0.015
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 11/105 (10%)

Query: 163 TANSHHLSALVTPAGKSYECQAQQTISLASSDPQKTVTMILSAVHIQPFDIISDFVFSEE 222
           +A +  L  L  P G+S+ C     I          V + L ++ +Q   +    VF + 
Sbjct: 231 SAQNASLRDLQAPLGQSFSCSNSSIIL------SPAVHLDLLSLRLQAAQLPHTGVFGQS 284

Query: 223 HKCPVDEREQLEETLPLILGLI-LGLVIMVTLAIYHVHHKMTANQ 266
             CP D        LPLI+GLI LGL+ +V +A   +  + +A Q
Sbjct: 285 FSCPSDR----SILLPLIIGLILLGLLALVLIAFCIIRRRPSAYQ 325


>gi|91199548 CD68 antigen isoform A [Homo sapiens]
          Length = 354

 Score = 37.4 bits (85), Expect = 0.015
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 11/105 (10%)

Query: 163 TANSHHLSALVTPAGKSYECQAQQTISLASSDPQKTVTMILSAVHIQPFDIISDFVFSEE 222
           +A +  L  L  P G+S+ C     I          V + L ++ +Q   +    VF + 
Sbjct: 258 SAQNASLRDLQAPLGQSFSCSNSSIIL------SPAVHLDLLSLRLQAAQLPHTGVFGQS 311

Query: 223 HKCPVDEREQLEETLPLILGLI-LGLVIMVTLAIYHVHHKMTANQ 266
             CP D        LPLI+GLI LGL+ +V +A   +  + +A Q
Sbjct: 312 FSCPSDR----SILLPLIIGLILLGLLALVLIAFCIIRRRPSAYQ 352


>gi|157738685 G protein-coupled receptor 103 [Homo sapiens]
          Length = 431

 Score = 32.0 bits (71), Expect = 0.62
 Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 5/52 (9%)

Query: 207 HIQPFDIISDFVFSEEHKCPVDE-----REQLEETLPLILGLILGLVIMVTL 253
           H+Q  +I  DF++ +EH C ++E      +++  T  L++  +L L++M+ L
Sbjct: 182 HVQQLEIKYDFLYEKEHICCLEEWTSPVHQKIYTTFILVILFLLPLMVMLIL 233


>gi|33519481 neural cell adhesion molecule 2 precursor [Homo
           sapiens]
          Length = 837

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 132 PEATWRLSKVQFVYDSSEKTHFKDAVSAGKHTANSHHLSALVTPAGKSYECQAQQTI 188
           PE TW+ +   F +   +K+        G+H ++S H+  +       Y+C+A   I
Sbjct: 330 PEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRI 386


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,672,327
Number of Sequences: 37866
Number of extensions: 370017
Number of successful extensions: 917
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 908
Number of HSP's gapped (non-prelim): 16
length of query: 280
length of database: 18,247,518
effective HSP length: 101
effective length of query: 179
effective length of database: 14,423,052
effective search space: 2581726308
effective search space used: 2581726308
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.