Search of human proteins with 13775200

Search of human proteins with 13775200

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13775200 SF3b10 [Homo sapiens]
         (86 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13775200 SF3b10 [Homo sapiens]                                     188   7e-49
gi|5730120 YKT6 v-SNARE protein [Homo sapiens]                         29   0.70 
gi|75905803 parathyroid hormone-responsive B1 isoform 4 [Homo sa...    27   2.7  
gi|75905801 parathyroid hormone-responsive B1 isoform 3 [Homo sa...    27   2.7  
gi|38569434 parathyroid hormone-responsive B1 isoform 2 [Homo sa...    27   2.7  
gi|38569432 parathyroid hormone-responsive B1 isoform 1 [Homo sa...    27   2.7  
gi|47578117 DEP domain containing 2 isoform b [Homo sapiens]           27   2.7  
gi|47578115 DEP domain containing 2 isoform a [Homo sapiens]           27   2.7  
gi|222537747 hypothetical protein LOC342979 [Homo sapiens]             26   7.7  

>gi|13775200 SF3b10 [Homo sapiens]
          Length = 86

 Score =  188 bits (478), Expect = 7e-49
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 1  MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENES 60
          MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENES
Sbjct: 1  MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENES 60

Query: 61 KARVRFNLMEKMLQPCGPPADKPEEN 86
          KARVRFNLMEKMLQPCGPPADKPEEN
Sbjct: 61 KARVRFNLMEKMLQPCGPPADKPEEN 86


>gi|5730120 YKT6 v-SNARE protein [Homo sapiens]
          Length = 198

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 35  QHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADK 82
           + +D  C      D L    IA+NE  +RV F L+EK+L       D+
Sbjct: 60  KEQDYLCHVYVRNDSLAGVVIADNEYPSRVAFTLLEKVLDEFSKQVDR 107


>gi|75905803 parathyroid hormone-responsive B1 isoform 4 [Homo
           sapiens]
          Length = 882

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 2   TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQH-RDSYCSYMGHFDLLNYFAIAENES 60
           + RY I S  E  +  ++ T        E+   Q  +D  CS+ G   L  YF + ++  
Sbjct: 591 SQRYRIQS--EQFEDLWLITNELILRLQEYFEKQGVKDFACSFSGSIPLQEYFELIDHHF 648

Query: 61  KARVRFNLMEKML 73
           + R+    +E++L
Sbjct: 649 ELRINGEKLEELL 661


>gi|75905801 parathyroid hormone-responsive B1 isoform 3 [Homo
           sapiens]
          Length = 852

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 2   TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQH-RDSYCSYMGHFDLLNYFAIAENES 60
           + RY I S  E  +  ++ T        E+   Q  +D  CS+ G   L  YF + ++  
Sbjct: 561 SQRYRIQS--EQFEDLWLITNELILRLQEYFEKQGVKDFACSFSGSIPLQEYFELIDHHF 618

Query: 61  KARVRFNLMEKML 73
           + R+    +E++L
Sbjct: 619 ELRINGEKLEELL 631


>gi|38569434 parathyroid hormone-responsive B1 isoform 2 [Homo
           sapiens]
          Length = 887

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 2   TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQH-RDSYCSYMGHFDLLNYFAIAENES 60
           + RY I S  E  +  ++ T        E+   Q  +D  CS+ G   L  YF + ++  
Sbjct: 596 SQRYRIQS--EQFEDLWLITNELILRLQEYFEKQGVKDFACSFSGSIPLQEYFELIDHHF 653

Query: 61  KARVRFNLMEKML 73
           + R+    +E++L
Sbjct: 654 ELRINGEKLEELL 666


>gi|38569432 parathyroid hormone-responsive B1 isoform 1 [Homo
           sapiens]
          Length = 847

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 2   TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQH-RDSYCSYMGHFDLLNYFAIAENES 60
           + RY I S  E  +  ++ T        E+   Q  +D  CS+ G   L  YF + ++  
Sbjct: 556 SQRYRIQS--EQFEDLWLITNELILRLQEYFEKQGVKDFACSFSGSIPLQEYFELIDHHF 613

Query: 61  KARVRFNLMEKML 73
           + R+    +E++L
Sbjct: 614 ELRINGEKLEELL 626


>gi|47578117 DEP domain containing 2 isoform b [Homo sapiens]
          Length = 979

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 50  LNYFAIAENESKARVRFNLMEKMLQPCG 77
           L Y  + E +S A ++ N++EKM++P G
Sbjct: 817 LEYGVVYEYDSTAGIKCNVVEKMIEPKG 844


>gi|47578115 DEP domain containing 2 isoform a [Homo sapiens]
          Length = 1606

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 50  LNYFAIAENESKARVRFNLMEKMLQPCG 77
           L Y  + E +S A ++ N++EKM++P G
Sbjct: 817 LEYGVVYEYDSTAGIKCNVVEKMIEPKG 844


>gi|222537747 hypothetical protein LOC342979 [Homo sapiens]
          Length = 673

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 5   YTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHR 37
           +T+ SQL+ LQS   G  H  + +  W    HR
Sbjct: 89  FTLQSQLQLLQSASTGAQHKPSGRPSWRRQGHR 121


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.133    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,752,756
Number of Sequences: 37866
Number of extensions: 128493
Number of successful extensions: 238
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 229
Number of HSP's gapped (non-prelim): 9
length of query: 86
length of database: 18,247,518
effective HSP length: 58
effective length of query: 28
effective length of database: 16,051,290
effective search space: 449436120
effective search space used: 449436120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.