Search of human proteins with 6912714

Search of human proteins with 6912714

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|6912714 translocase of inner mitochondrial membrane 9
homolog [Homo sapiens]
         (89 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|6912714 translocase of inner mitochondrial membrane 9 homolog...   185   8e-48
gi|6912382 fractured callus expressed transcript 1 [Homo sapiens]      45   1e-05
gi|6912708 translocase of inner mitochondrial membrane 10 homolo...    40   5e-04
gi|33239445 eukaryotic translation initiation factor 3, subunit ...    27   2.6  
gi|83367072 eukaryotic translation initiation factor 3, subunit ...    27   2.6  
gi|194018535 Gen homolog 1, endonuclease [Homo sapiens]                27   3.4  
gi|194018531 Gen homolog 1, endonuclease [Homo sapiens]                27   3.4  
gi|118918435 von Willebrand factor A domain containing 3B [Homo ...    26   5.9  
gi|12962939 OTU domain, ubiquitin aldehyde binding 2 [Homo sapiens]    26   7.7  

>gi|6912714 translocase of inner mitochondrial membrane 9 homolog
          [Homo sapiens]
          Length = 89

 Score =  185 bits (469), Expect = 8e-48
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 1  MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMT 60
          MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMT
Sbjct: 1  MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMT 60

Query: 61 QRISMRFQEYHIQQNEALAAKAGLLGQPR 89
          QRISMRFQEYHIQQNEALAAKAGLLGQPR
Sbjct: 61 QRISMRFQEYHIQQNEALAAKAGLLGQPR 89


>gi|6912382 fractured callus expressed transcript 1 [Homo sapiens]
          Length = 103

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 20/63 (31%), Positives = 30/63 (47%)

Query: 1  MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMT 60
          M  Q  +  Q++  ++FL  YN++TE CF  CV     R +  EE  C   C  K +   
Sbjct: 1  MERQQQQQQQLRNLRDFLLVYNRMTELCFQRCVPSLHHRALDAEEEACLHSCAGKLIHSN 60

Query: 61 QRI 63
           R+
Sbjct: 61 HRL 63


>gi|6912708 translocase of inner mitochondrial membrane 10 homolog
          [Homo sapiens]
          Length = 90

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 21 YNKLTETCFLDCVKD-FTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHIQQNEAL 78
          YN++T  C   CV   +   E+   E+ C + C+ KYL + +R+  +  E  +Q  E +
Sbjct: 22 YNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTELSMQDEELM 80


>gi|33239445 eukaryotic translation initiation factor 3, subunit 9
           eta, 116kDa [Homo sapiens]
          Length = 814

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 9   DQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQ 68
           +QIKQ K+ L  Y+K+ E    D +      +   E         +KY KM Q + M   
Sbjct: 715 EQIKQIKKDLKKYSKIFEQ--KDRLSQSKASKELVERRRTMMEDFRKYRKMAQELYME-- 770

Query: 69  EYHIQQNEALAAKAGL 84
               Q+NE L  + G+
Sbjct: 771 ----QKNERLELRGGV 782


>gi|83367072 eukaryotic translation initiation factor 3, subunit 9
           eta, 116kDa [Homo sapiens]
          Length = 814

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 9   DQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQ 68
           +QIKQ K+ L  Y+K+ E    D +      +   E         +KY KM Q + M   
Sbjct: 715 EQIKQIKKDLKKYSKIFEQ--KDRLSQSKASKELVERRRTMMEDFRKYRKMAQELYME-- 770

Query: 69  EYHIQQNEALAAKAGL 84
               Q+NE L  + G+
Sbjct: 771 ----QKNERLELRGGV 782


>gi|194018535 Gen homolog 1, endonuclease [Homo sapiens]
          Length = 908

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 11  IKQFKEFLGTYNKLT--ETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQ 68
           IK+ ++ + +Y      E+CF D  K   +     ++   S  CL   L + QR+ +RFQ
Sbjct: 847 IKETEQCVRSYETAENEESCFPDSTKSSLSSLQCHKKENNSGTCLDSPLPLRQRLKLRFQ 906


>gi|194018531 Gen homolog 1, endonuclease [Homo sapiens]
          Length = 908

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 11  IKQFKEFLGTYNKLT--ETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQ 68
           IK+ ++ + +Y      E+CF D  K   +     ++   S  CL   L + QR+ +RFQ
Sbjct: 847 IKETEQCVRSYETAENEESCFPDSTKSSLSSLQCHKKENNSGTCLDSPLPLRQRLKLRFQ 906


>gi|118918435 von Willebrand factor A domain containing 3B [Homo
           sapiens]
          Length = 1294

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 30  LDCVKDFTTREV--KPEETTCSEHCLQKYLKMTQRISM 65
           +DC  + T+ E+   PE+T  S+  LQKY    Q++S+
Sbjct: 369 VDCESETTSVEIASNPEDTWDSKTWLQKYGLKAQKLSL 406


>gi|12962939 OTU domain, ubiquitin aldehyde binding 2 [Homo sapiens]
          Length = 234

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 33  VKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQ-EYHIQQNEAL 78
           +KDF T EV+P  T C +H   +   ++Q +S+  Q EY  + + AL
Sbjct: 160 IKDFCTHEVEPMATEC-DHI--QITALSQALSIALQVEYVDEMDTAL 203


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,113,690
Number of Sequences: 37866
Number of extensions: 107475
Number of successful extensions: 302
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 9
length of query: 89
length of database: 18,247,518
effective HSP length: 61
effective length of query: 28
effective length of database: 15,937,692
effective search space: 446255376
effective search space used: 446255376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.