Search of human proteins with 6715602

Search of human proteins with 6715602

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|6715602 glutathione peroxidase 5 isoform 2 precursor [Homo
sapiens]
         (100 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|6715602 glutathione peroxidase 5 isoform 2 precursor [Homo sa...   206   3e-54
gi|4557629 glutathione peroxidase 5 isoform 1 precursor [Homo sa...   171   1e-43
gi|6006001 glutathione peroxidase 3 precursor [Homo sapiens]           92   7e-20
gi|33186887 glutathione peroxidase 6 [Homo sapiens]                    88   2e-18
gi|15618997 glutathione peroxidase 7 [Homo sapiens]                    33   0.037
gi|194440727 dynein heavy chain domain 2 isoform 1 [Homo sapiens]      30   0.54 
gi|192455698 glutathione peroxidase 8 [Homo sapiens]                   27   2.7  

>gi|6715602 glutathione peroxidase 5 isoform 2 precursor [Homo
           sapiens]
          Length = 100

 Score =  206 bits (524), Expect = 3e-54
 Identities = 100/100 (100%), Positives = 100/100 (100%)

Query: 1   MTTQLRVVHLLPLLLACFVQTSPKQEKMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYV 60
           MTTQLRVVHLLPLLLACFVQTSPKQEKMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYV
Sbjct: 1   MTTQLRVVHLLPLLLACFVQTSPKQEKMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYV 60

Query: 61  GKHILFVNVATYCGLTAQYPGMSVQGEDLYLVSSFLRKGM 100
           GKHILFVNVATYCGLTAQYPGMSVQGEDLYLVSSFLRKGM
Sbjct: 61  GKHILFVNVATYCGLTAQYPGMSVQGEDLYLVSSFLRKGM 100


>gi|4557629 glutathione peroxidase 5 isoform 1 precursor [Homo
          sapiens]
          Length = 221

 Score =  171 bits (433), Expect = 1e-43
 Identities = 82/89 (92%), Positives = 85/89 (95%)

Query: 1  MTTQLRVVHLLPLLLACFVQTSPKQEKMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYV 60
          MTTQLRVVHLLPLLLACFVQTSPKQEKMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYV
Sbjct: 1  MTTQLRVVHLLPLLLACFVQTSPKQEKMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYV 60

Query: 61 GKHILFVNVATYCGLTAQYPGMSVQGEDL 89
          GKHILFVNVATYCGLTAQYP ++   E+L
Sbjct: 61 GKHILFVNVATYCGLTAQYPELNALQEEL 89


>gi|6006001 glutathione peroxidase 3 precursor [Homo sapiens]
          Length = 226

 Score = 92.4 bits (228), Expect = 7e-20
 Identities = 47/89 (52%), Positives = 59/89 (66%)

Query: 1  MTTQLRVVHLLPLLLACFVQTSPKQEKMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYV 60
          M   L+   LL LLLA FV  S  QEK KMDCH    GTIY+Y A+ ++  EY+ FKQY 
Sbjct: 1  MARLLQASCLLSLLLAGFVSQSRGQEKSKMDCHGGISGTIYEYGALTIDGEEYIPFKQYA 60

Query: 61 GKHILFVNVATYCGLTAQYPGMSVQGEDL 89
          GK++LFVNVA+Y GLT QY  ++   E+L
Sbjct: 61 GKYVLFVNVASYUGLTGQYIELNALQEEL 89


>gi|33186887 glutathione peroxidase 6 [Homo sapiens]
          Length = 221

 Score = 87.8 bits (216), Expect = 2e-18
 Identities = 42/89 (47%), Positives = 56/89 (62%)

Query: 1  MTTQLRVVHLLPLLLACFVQTSPKQEKMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYV 60
          M  Q +   L+   L  F Q + K +  K+DC+K   GTIY+Y A+ LN  EY+ FKQ+ 
Sbjct: 1  MFQQFQASCLVLFFLVGFAQQTLKPQNRKVDCNKGVTGTIYEYGALTLNGEEYIQFKQFA 60

Query: 61 GKHILFVNVATYCGLTAQYPGMSVQGEDL 89
          GKH+LFVNVA Y GL AQYP ++   E+L
Sbjct: 61 GKHVLFVNVAAYUGLAAQYPELNALQEEL 89


>gi|15618997 glutathione peroxidase 7 [Homo sapiens]
          Length = 187

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 32 CHKDEKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTAQY 79
          C + E+   YD++A+ + + + VS ++Y G   L VNVA+ CG T Q+
Sbjct: 18 CAQQEQD-FYDFKAVNI-RGKLVSLEKYRGSVSLVVNVASECGFTDQH 63


>gi|194440727 dynein heavy chain domain 2 isoform 1 [Homo sapiens]
          Length = 3092

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 29   KMDCHKDEKGTIYDYEAIALNKNEYVSFKQYV 60
            K +C  DEKG +YDY     NK  +V + + +
Sbjct: 1818 KWECPFDEKGLVYDYMYELKNKGRWVHWNELI 1849


>gi|192455698 glutathione peroxidase 8 [Homo sapiens]
          Length = 209

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 50 KNEYVSFKQYVGKHILFVNVATYCGLT 76
          K   VS ++Y GK  L VNVA+ C LT
Sbjct: 56 KGRTVSLEKYKGKVSLVVNVASDCQLT 82


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,477,321
Number of Sequences: 37866
Number of extensions: 120744
Number of successful extensions: 206
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 7
length of query: 100
length of database: 18,247,518
effective HSP length: 71
effective length of query: 29
effective length of database: 15,559,032
effective search space: 451211928
effective search space used: 451211928
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.