Search of human proteins with 62865608

Search of human proteins with 62865608

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|62865608 tripartite motif-containing 36 isoform 3 [Homo
sapiens]
         (61 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|62865608 tripartite motif-containing 36 isoform 3 [Homo sapiens]   124   2e-29
gi|62865606 tripartite motif-containing 36 isoform 1 [Homo sapiens]    46   6e-06
gi|62865610 tripartite motif-containing 36 isoform 2 [Homo sapiens]    45   2e-05
gi|55741661 hypothetical protein LOC57653 [Homo sapiens]               27   2.7  
gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I...    26   6.0  
gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I...    26   6.0  

>gi|62865608 tripartite motif-containing 36 isoform 3 [Homo
          sapiens]
          Length = 61

 Score =  124 bits (310), Expect = 2e-29
 Identities = 61/61 (100%), Positives = 61/61 (100%)

Query: 1  MSESGEMSEFGYIMELIAKGKASAMGLQQTHEHSRLTSKGGEARCPFEISEVGKQSLPRR 60
          MSESGEMSEFGYIMELIAKGKASAMGLQQTHEHSRLTSKGGEARCPFEISEVGKQSLPRR
Sbjct: 1  MSESGEMSEFGYIMELIAKGKASAMGLQQTHEHSRLTSKGGEARCPFEISEVGKQSLPRR 60

Query: 61 T 61
          T
Sbjct: 61 T 61


>gi|62865606 tripartite motif-containing 36 isoform 1 [Homo
          sapiens]
          Length = 728

 Score = 46.2 bits (108), Expect = 6e-06
 Identities = 21/29 (72%), Positives = 25/29 (86%)

Query: 1  MSESGEMSEFGYIMELIAKGKASAMGLQQ 29
          MSESGEMSEFGYIMELIAKGK +   +++
Sbjct: 1  MSESGEMSEFGYIMELIAKGKVTIKNIER 29


>gi|62865610 tripartite motif-containing 36 isoform 2 [Homo
          sapiens]
          Length = 60

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 21/21 (100%), Positives = 21/21 (100%)

Query: 1  MSESGEMSEFGYIMELIAKGK 21
          MSESGEMSEFGYIMELIAKGK
Sbjct: 1  MSESGEMSEFGYIMELIAKGK 21


>gi|55741661 hypothetical protein LOC57653 [Homo sapiens]
          Length = 1646

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 13  IMELIAKGKASAMGLQQTHEHSRLTSKGGEARCPFEISEVGKQSLP 58
           +M+ I   K S    Q+  EH R + +   A    EI++VGK+  P
Sbjct: 295 LMDTIVPEKISTSTFQRQAEHKRKSYESALASFQEEIAQVGKEMEP 340


>gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I
           subunit isoform b [Homo sapiens]
          Length = 2188

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 2   SESGEMSE--FGYIMELIAKGKASAMGLQQTHEHSRLTSKGGEARCP 46
           +E G+  E  F Y+  ++ K K  A+GL Q  + SR  + G EA  P
Sbjct: 429 AEPGDCYEEIFQYVCHILRKAKRRALGLYQALQ-SRRQALGPEAPAP 474


>gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I
           subunit isoform a [Homo sapiens]
          Length = 2223

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 2   SESGEMSE--FGYIMELIAKGKASAMGLQQTHEHSRLTSKGGEARCP 46
           +E G+  E  F Y+  ++ K K  A+GL Q  + SR  + G EA  P
Sbjct: 429 AEPGDCYEEIFQYVCHILRKAKRRALGLYQALQ-SRRQALGPEAPAP 474


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.311    0.127    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,019,957
Number of Sequences: 37866
Number of extensions: 57181
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 6
length of query: 61
length of database: 18,247,518
effective HSP length: 34
effective length of query: 27
effective length of database: 16,960,074
effective search space: 457921998
effective search space used: 457921998
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.