Search of human proteins with 5729802

Search of human proteins with 5729802

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5729802 thioredoxin-like 4A [Homo sapiens]
         (142 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5729802 thioredoxin-like 4A [Homo sapiens]                         300   3e-82
gi|169164452 PREDICTED: similar to hCG1643669 [Homo sapiens]          216   5e-57
gi|169164815 PREDICTED: similar to hCG1643669 [Homo sapiens]          216   5e-57
gi|169163509 PREDICTED: hypothetical protein LOC100131482 [Homo ...   216   5e-57
gi|215272376 thioredoxin-like 4B [Homo sapiens]                       112   1e-25
gi|214832254 thioredoxin-like 4B [Homo sapiens]                       112   1e-25
gi|8923475 thioredoxin-like 4B [Homo sapiens]                         112   1e-25
gi|95113651 glutaredoxin 3 [Homo sapiens]                              39   0.001
gi|50592994 thioredoxin [Homo sapiens]                                 33   0.079
gi|91206450 ankyrin and armadillo repeat containing [Homo sapiens]     28   3.3  
gi|189011550 N-acylsphingosine amidohydrolase 1 isoform c [Homo ...    27   5.7  
gi|189011548 N-acylsphingosine amidohydrolase 1 isoform a prepro...    27   5.7  
gi|189011546 N-acylsphingosine amidohydrolase 1 isoform b [Homo ...    27   5.7  

>gi|5729802 thioredoxin-like 4A [Homo sapiens]
          Length = 142

 Score =  300 bits (767), Expect = 3e-82
 Identities = 142/142 (100%), Positives = 142/142 (100%)

Query: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60
           MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 61  VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120
           VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY
Sbjct: 61  VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120

Query: 121 RGARKGRGLVVSPKDYSTKYRY 142
           RGARKGRGLVVSPKDYSTKYRY
Sbjct: 121 RGARKGRGLVVSPKDYSTKYRY 142


>gi|169164452 PREDICTED: similar to hCG1643669 [Homo sapiens]
          Length = 157

 Score =  216 bits (550), Expect = 5e-57
 Identities = 106/134 (79%), Positives = 117/134 (87%), Gaps = 1/134 (0%)

Query: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60
           MS+ML HLH+ WQVDQAIL  ED + VIRFGH WDPTCMKMD+VLYSI EKVK+FAVI+L
Sbjct: 1   MSHMLLHLHSSWQVDQAILPGEDCMAVIRFGHGWDPTCMKMDKVLYSIIEKVKDFAVIFL 60

Query: 61  VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120
           V+IT+VPDFNKMYELYDPCT+MFFFRNKHIM+ LGTG NNKINWAMEDKQEMVDIIETV 
Sbjct: 61  VNITKVPDFNKMYELYDPCTIMFFFRNKHIMVVLGTG-NNKINWAMEDKQEMVDIIETVD 119

Query: 121 RGARKGRGLVVSPK 134
             A  G  LV+SPK
Sbjct: 120 CRALNGGDLVLSPK 133


>gi|169164815 PREDICTED: similar to hCG1643669 [Homo sapiens]
          Length = 157

 Score =  216 bits (550), Expect = 5e-57
 Identities = 106/134 (79%), Positives = 117/134 (87%), Gaps = 1/134 (0%)

Query: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60
           MS+ML HLH+ WQVDQAIL  ED + VIRFGH WDPTCMKMD+VLYSI EKVK+FAVI+L
Sbjct: 1   MSHMLLHLHSSWQVDQAILPGEDCMAVIRFGHGWDPTCMKMDKVLYSIIEKVKDFAVIFL 60

Query: 61  VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120
           V+IT+VPDFNKMYELYDPCT+MFFFRNKHIM+ LGTG NNKINWAMEDKQEMVDIIETV 
Sbjct: 61  VNITKVPDFNKMYELYDPCTIMFFFRNKHIMVVLGTG-NNKINWAMEDKQEMVDIIETVD 119

Query: 121 RGARKGRGLVVSPK 134
             A  G  LV+SPK
Sbjct: 120 CRALNGGDLVLSPK 133


>gi|169163509 PREDICTED: hypothetical protein LOC100131482 [Homo
           sapiens]
          Length = 157

 Score =  216 bits (550), Expect = 5e-57
 Identities = 106/134 (79%), Positives = 117/134 (87%), Gaps = 1/134 (0%)

Query: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60
           MS+ML HLH+ WQVDQAIL  ED + VIRFGH WDPTCMKMD+VLYSI EKVK+FAVI+L
Sbjct: 1   MSHMLLHLHSSWQVDQAILPGEDCMAVIRFGHGWDPTCMKMDKVLYSIIEKVKDFAVIFL 60

Query: 61  VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120
           V+IT+VPDFNKMYELYDPCT+MFFFRNKHIM+ LGTG NNKINWAMEDKQEMVDIIETV 
Sbjct: 61  VNITKVPDFNKMYELYDPCTIMFFFRNKHIMVVLGTG-NNKINWAMEDKQEMVDIIETVD 119

Query: 121 RGARKGRGLVVSPK 134
             A  G  LV+SPK
Sbjct: 120 CRALNGGDLVLSPK 133


>gi|215272376 thioredoxin-like 4B [Homo sapiens]
          Length = 149

 Score =  112 bits (279), Expect = 1e-25
 Identities = 53/136 (38%), Positives = 90/136 (66%), Gaps = 2/136 (1%)

Query: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60
           MS++LP L +  +VDQAI S  ++V+V+RFG D DP C+++D++L   +  +   A IYL
Sbjct: 1   MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL 60

Query: 61  VDITEVPDFNKMYEL-YDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV 119
           VD+ +   + + +++ Y P TV FFF  +H+ +D G+ ++ K   + + KQ+ +D+IE +
Sbjct: 61  VDVDQTAVYTQYFDISYIPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 119

Query: 120 YRGARKGRGLVVSPKD 135
           YRGA +G+ +V SP D
Sbjct: 120 YRGAMRGKLIVQSPID 135


>gi|214832254 thioredoxin-like 4B [Homo sapiens]
          Length = 149

 Score =  112 bits (279), Expect = 1e-25
 Identities = 53/136 (38%), Positives = 90/136 (66%), Gaps = 2/136 (1%)

Query: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60
           MS++LP L +  +VDQAI S  ++V+V+RFG D DP C+++D++L   +  +   A IYL
Sbjct: 1   MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL 60

Query: 61  VDITEVPDFNKMYEL-YDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV 119
           VD+ +   + + +++ Y P TV FFF  +H+ +D G+ ++ K   + + KQ+ +D+IE +
Sbjct: 61  VDVDQTAVYTQYFDISYIPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 119

Query: 120 YRGARKGRGLVVSPKD 135
           YRGA +G+ +V SP D
Sbjct: 120 YRGAMRGKLIVQSPID 135


>gi|8923475 thioredoxin-like 4B [Homo sapiens]
          Length = 149

 Score =  112 bits (279), Expect = 1e-25
 Identities = 53/136 (38%), Positives = 90/136 (66%), Gaps = 2/136 (1%)

Query: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60
           MS++LP L +  +VDQAI S  ++V+V+RFG D DP C+++D++L   +  +   A IYL
Sbjct: 1   MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL 60

Query: 61  VDITEVPDFNKMYEL-YDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV 119
           VD+ +   + + +++ Y P TV FFF  +H+ +D G+ ++ K   + + KQ+ +D+IE +
Sbjct: 61  VDVDQTAVYTQYFDISYIPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 119

Query: 120 YRGARKGRGLVVSPKD 135
           YRGA +G+ +V SP D
Sbjct: 120 YRGAMRGKLIVQSPID 135


>gi|95113651 glutaredoxin 3 [Homo sapiens]
          Length = 335

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 19/78 (24%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 13 QVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKM 72
          Q ++ +  +   ++V+ F   W P C +M+EV+  +A+++   + + L +   VP+ ++ 
Sbjct: 21 QFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKL-EAEGVPEVSEK 79

Query: 73 YELYDPCTVMFFFRNKHI 90
          YE+    T +FF  ++ I
Sbjct: 80 YEISSVPTFLFFKNSQKI 97


>gi|50592994 thioredoxin [Homo sapiens]
          Length = 105

 Score = 33.1 bits (74), Expect = 0.079
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 4  MLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL-VD 62
          M+  + +     +A+ +  D++VV+ F   W   C  +    +S++EK  N  VI+L VD
Sbjct: 1  MVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN--VIFLEVD 58

Query: 63 ITEVPDFNKMYELYDPCTVMFFFRNKHI 90
          + +  D     E+    T  FF + + +
Sbjct: 59 VDDCQDVASECEVKCMPTFQFFKKGQKV 86


>gi|91206450 ankyrin and armadillo repeat containing [Homo sapiens]
          Length = 1363

 Score = 27.7 bits (60), Expect = 3.3
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 17/77 (22%)

Query: 55  FAVIYLVDITEVPDFNKMYE-------LYDPC----TVMFFFRNKHIMIDLGTGNNNKIN 103
           F+   L DIT+ PDFN++Y+        YDP     T +F    ++IM+ L T +  +I 
Sbjct: 126 FSSAGLTDITKDPDFNEIYDEDVNEDPTYDPNSPEETAVFMKYAENIMLKL-TFSTTQI- 183

Query: 104 WAMEDKQEMVDIIETVY 120
                + E V I ET Y
Sbjct: 184 ----QQYENVFIFETGY 196


>gi|189011550 N-acylsphingosine amidohydrolase 1 isoform c [Homo
           sapiens]
          Length = 389

 Score = 26.9 bits (58), Expect = 5.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 50  EKVKNFAVIYLVDITEVPDFNKMYELYDPCT 80
           E++K  A +  + + E+  FN  YEL+  CT
Sbjct: 108 EEMKGIAAVTDIPLGEIISFNIFYELFTICT 138


>gi|189011548 N-acylsphingosine amidohydrolase 1 isoform a
           preproprotein [Homo sapiens]
          Length = 395

 Score = 26.9 bits (58), Expect = 5.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 50  EKVKNFAVIYLVDITEVPDFNKMYELYDPCT 80
           E++K  A +  + + E+  FN  YEL+  CT
Sbjct: 114 EEMKGIAAVTDIPLGEIISFNIFYELFTICT 144


>gi|189011546 N-acylsphingosine amidohydrolase 1 isoform b [Homo
           sapiens]
          Length = 411

 Score = 26.9 bits (58), Expect = 5.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 50  EKVKNFAVIYLVDITEVPDFNKMYELYDPCT 80
           E++K  A +  + + E+  FN  YEL+  CT
Sbjct: 130 EEMKGIAAVTDIPLGEIISFNIFYELFTICT 160


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.139    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,300,931
Number of Sequences: 37866
Number of extensions: 206074
Number of successful extensions: 394
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 379
Number of HSP's gapped (non-prelim): 13
length of query: 142
length of database: 18,247,518
effective HSP length: 92
effective length of query: 50
effective length of database: 14,763,846
effective search space: 738192300
effective search space used: 738192300
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.