Search of human proteins with 56549687

Search of human proteins with 56549687

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|56549687 GTP-binding protein 8 isoform 2 [Homo sapiens]
         (251 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|56549687 GTP-binding protein 8 isoform 2 [Homo sapiens]            501   e-142
gi|56549685 GTP-binding protein 8 isoform 1 [Homo sapiens]            484   e-137
gi|72534692 5'-nucleotidase domain containing 3 [Homo sapiens]         30   2.0  
gi|45593140 GTP binding protein 2 [Homo sapiens]                       30   2.6  
gi|157743252 pecanex-like 3 [Homo sapiens]                             28   5.8  

>gi|56549687 GTP-binding protein 8 isoform 2 [Homo sapiens]
          Length = 251

 Score =  501 bits (1289), Expect = e-142
 Identities = 251/251 (100%), Positives = 251/251 (100%)

Query: 1   MAAPGLRLGAGRLFEMPAVLERLSRYNSTSQAFAEVLRLPKQQLRKLLYPLQEVERFLAP 60
           MAAPGLRLGAGRLFEMPAVLERLSRYNSTSQAFAEVLRLPKQQLRKLLYPLQEVERFLAP
Sbjct: 1   MAAPGLRLGAGRLFEMPAVLERLSRYNSTSQAFAEVLRLPKQQLRKLLYPLQEVERFLAP 60

Query: 61  YGRQDLHLRIFDPSPEDIARADNIFTATERNRIDYVSSAVRIDHAPDLPRPEGHTKKMNF 120
           YGRQDLHLRIFDPSPEDIARADNIFTATERNRIDYVSSAVRIDHAPDLPRPEGHTKKMNF
Sbjct: 61  YGRQDLHLRIFDPSPEDIARADNIFTATERNRIDYVSSAVRIDHAPDLPRPEGHTKKMNF 120

Query: 121 FKVGKHFTVVDMPGYGFRAPEDFVDMVETYLKERRNLKRTFLLVDSVVGIQKTDNIAIEM 180
           FKVGKHFTVVDMPGYGFRAPEDFVDMVETYLKERRNLKRTFLLVDSVVGIQKTDNIAIEM
Sbjct: 121 FKVGKHFTVVDMPGYGFRAPEDFVDMVETYLKERRNLKRTFLLVDSVVGIQKTDNIAIEM 180

Query: 181 CEEFALPYVIVLTKIDKSSKGHLLKQVLQIQKFVNMKTQGCFPQLFPVSAVTFSGIHLLR 240
           CEEFALPYVIVLTKIDKSSKGHLLKQVLQIQKFVNMKTQGCFPQLFPVSAVTFSGIHLLR
Sbjct: 181 CEEFALPYVIVLTKIDKSSKGHLLKQVLQIQKFVNMKTQGCFPQLFPVSAVTFSGIHLLR 240

Query: 241 CFIASVTGSLD 251
           CFIASVTGSLD
Sbjct: 241 CFIASVTGSLD 251


>gi|56549685 GTP-binding protein 8 isoform 1 [Homo sapiens]
          Length = 284

 Score =  484 bits (1245), Expect = e-137
 Identities = 251/284 (88%), Positives = 251/284 (88%), Gaps = 33/284 (11%)

Query: 1   MAAPGLRLGAGRLFEMPAVLERLSRYNSTSQAFAEVLRLPKQQLRKLLYPLQEVERFLAP 60
           MAAPGLRLGAGRLFEMPAVLERLSRYNSTSQAFAEVLRLPKQQLRKLLYPLQEVERFLAP
Sbjct: 1   MAAPGLRLGAGRLFEMPAVLERLSRYNSTSQAFAEVLRLPKQQLRKLLYPLQEVERFLAP 60

Query: 61  YGRQDLHLRIFDPSPEDIARADNIFTATERNRIDYVSSAVRIDHAPDLPRPE-------- 112
           YGRQDLHLRIFDPSPEDIARADNIFTATERNRIDYVSSAVRIDHAPDLPRPE        
Sbjct: 61  YGRQDLHLRIFDPSPEDIARADNIFTATERNRIDYVSSAVRIDHAPDLPRPEVCFIGRSN 120

Query: 113 -------------------------GHTKKMNFFKVGKHFTVVDMPGYGFRAPEDFVDMV 147
                                    GHTKKMNFFKVGKHFTVVDMPGYGFRAPEDFVDMV
Sbjct: 121 VGKSSLIKALFSLAPEVEVRVSKKPGHTKKMNFFKVGKHFTVVDMPGYGFRAPEDFVDMV 180

Query: 148 ETYLKERRNLKRTFLLVDSVVGIQKTDNIAIEMCEEFALPYVIVLTKIDKSSKGHLLKQV 207
           ETYLKERRNLKRTFLLVDSVVGIQKTDNIAIEMCEEFALPYVIVLTKIDKSSKGHLLKQV
Sbjct: 181 ETYLKERRNLKRTFLLVDSVVGIQKTDNIAIEMCEEFALPYVIVLTKIDKSSKGHLLKQV 240

Query: 208 LQIQKFVNMKTQGCFPQLFPVSAVTFSGIHLLRCFIASVTGSLD 251
           LQIQKFVNMKTQGCFPQLFPVSAVTFSGIHLLRCFIASVTGSLD
Sbjct: 241 LQIQKFVNMKTQGCFPQLFPVSAVTFSGIHLLRCFIASVTGSLD 284


>gi|72534692 5'-nucleotidase domain containing 3 [Homo sapiens]
          Length = 548

 Score = 30.0 bits (66), Expect = 2.0
 Identities = 18/67 (26%), Positives = 29/67 (43%)

Query: 174 DNIAIEMCEEFALPYVIVLTKIDKSSKGHLLKQVLQIQKFVNMKTQGCFPQLFPVSAVTF 233
           D   IEM E   +P   +     KSS G+ +KQ + I     M    C  + F  + + +
Sbjct: 182 DEEVIEMYEGSHVPLEQMSDFYGKSSHGNTMKQFMDIFSLPEMTLLSCVNEYFLKNNIDY 241

Query: 234 SGIHLLR 240
             +HL +
Sbjct: 242 EPVHLYK 248


>gi|45593140 GTP binding protein 2 [Homo sapiens]
          Length = 602

 Score = 29.6 bits (65), Expect = 2.6
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 162 LLVDSVVGIQKTDNIAIEMCEEFALPYVIVLTKIDKSSKGHLLKQVLQIQKFVNMKTQGC 221
           LLV +  GI  T    + +     +P+ IV++KID  +K  + + V Q+++   +K  GC
Sbjct: 285 LLVSANTGIAGTTREHLGLALALKVPFFIVVSKIDLCAKTTVERTVRQLERV--LKQPGC 342


>gi|157743252 pecanex-like 3 [Homo sapiens]
          Length = 2034

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 72  DPSPEDIARADNIFTATERNRIDYVSS----AVRIDHAPDLPRPEG 113
           +P+P+    +D+ F+ T+R  +    S    +  +D  P  P PEG
Sbjct: 289 EPTPQKAGSSDSCFSGTDRETLSSFKSEKTNSTHLDSPPGGPAPEG 334


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.140    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,885,149
Number of Sequences: 37866
Number of extensions: 376924
Number of successful extensions: 1013
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1009
Number of HSP's gapped (non-prelim): 5
length of query: 251
length of database: 18,247,518
effective HSP length: 100
effective length of query: 151
effective length of database: 14,460,918
effective search space: 2183598618
effective search space used: 2183598618
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.