Search of human proteins with 5454002

Search of human proteins with 5454002

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5454002 putative c-Myc-responsive isoform 1 [Homo sapiens]
         (174 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5454002 putative c-Myc-responsive isoform 1 [Homo sapiens]         351   2e-97
gi|40354201 putative c-Myc-responsive isoform 2 [Homo sapiens]        253   8e-68
gi|122114658 hypothetical protein LOC23053 [Homo sapiens]              30   1.1  
gi|110227857 thiamin pyrophosphokinase 1 isoform b [Homo sapiens]      29   1.8  
gi|21362110 thiamin pyrophosphokinase 1 isoform a [Homo sapiens]       29   1.8  
gi|57165366 G4 protein [Homo sapiens]                                  28   5.2  
gi|4506209 proteasome 26S ATPase subunit 2 [Homo sapiens]              27   6.8  
gi|4557741 platelet-activating factor acetylhydrolase, isoform I...    27   8.9  

>gi|5454002 putative c-Myc-responsive isoform 1 [Homo sapiens]
          Length = 174

 Score =  351 bits (901), Expect = 2e-97
 Identities = 174/174 (100%), Positives = 174/174 (100%)

Query: 1   MAAAMVPGRSESWERGEPGRPALYFCGSIRGGREDRTLYERIVSRLRRFGTVLTEHVAAA 60
           MAAAMVPGRSESWERGEPGRPALYFCGSIRGGREDRTLYERIVSRLRRFGTVLTEHVAAA
Sbjct: 1   MAAAMVPGRSESWERGEPGRPALYFCGSIRGGREDRTLYERIVSRLRRFGTVLTEHVAAA 60

Query: 61  ELGARGEEAAGGDRLIHEQDLEWLQQADVVVAEVTQPSLGVGYELGRAVAFNKRILCLFR 120
           ELGARGEEAAGGDRLIHEQDLEWLQQADVVVAEVTQPSLGVGYELGRAVAFNKRILCLFR
Sbjct: 61  ELGARGEEAAGGDRLIHEQDLEWLQQADVVVAEVTQPSLGVGYELGRAVAFNKRILCLFR 120

Query: 121 PQSGRVLSAMIRGAADGSRFQVWDYEEGEVEALLDRYFEADPPGQVAASPDPTT 174
           PQSGRVLSAMIRGAADGSRFQVWDYEEGEVEALLDRYFEADPPGQVAASPDPTT
Sbjct: 121 PQSGRVLSAMIRGAADGSRFQVWDYEEGEVEALLDRYFEADPPGQVAASPDPTT 174


>gi|40354201 putative c-Myc-responsive isoform 2 [Homo sapiens]
          Length = 148

 Score =  253 bits (645), Expect = 8e-68
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MAAAMVPGRSESWERGEPGRPALYFCGSIRGGREDRTLYERIVSRLRRFGTVLTEHVAAA 60
           MAAAMVPGRSESWERGEPGRPALYFCGSIRGGREDRTLYERIVSRLRRFGTVLTEHVAAA
Sbjct: 1   MAAAMVPGRSESWERGEPGRPALYFCGSIRGGREDRTLYERIVSRLRRFGTVLTEHVAAA 60

Query: 61  ELGARGEEAAGGDRLIHEQDLEWLQQADVVVAEVTQPSLGVGYELGRAVAFNKRILCLFR 120
           ELGARGEEAAGGDRLIHEQDLEWLQQADVVVAEVTQPSLGVGYELGRAVAFNKRILCLFR
Sbjct: 61  ELGARGEEAAGGDRLIHEQDLEWLQQADVVVAEVTQPSLGVGYELGRAVAFNKRILCLFR 120

Query: 121 PQSGR 125
           PQSGR
Sbjct: 121 PQSGR 125


>gi|122114658 hypothetical protein LOC23053 [Homo sapiens]
          Length = 1842

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 13  WERGEPGRPALYFCGSIRGGRE-DRTLYERIVSRLRRFGTV---LTEHVAAAELGARGEE 68
           W R  P RP     G +   R+  R L      R +  GT    L E V +++ G R   
Sbjct: 508 WARALPSRPGASRSGGLEESRDRPRPLPTEPAVRPKEPGTKRKGLGEGVPSSQRGPRRLS 567

Query: 69  AAGGDRLIHE 78
           A GGD+ +H+
Sbjct: 568 AEGGDKALHK 577


>gi|110227857 thiamin pyrophosphokinase 1 isoform b [Homo sapiens]
          Length = 194

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 129 AMIRGAADGSRFQVWDYEEGEVEALLDRYFEAD 161
           A++R  ADG   +++D  EGE E+ L  +   D
Sbjct: 39  ALLRACADGGANRLYDITEGERESFLPEFINGD 71


>gi|21362110 thiamin pyrophosphokinase 1 isoform a [Homo sapiens]
          Length = 243

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 129 AMIRGAADGSRFQVWDYEEGEVEALLDRYFEAD 161
           A++R  ADG   +++D  EGE E+ L  +   D
Sbjct: 39  ALLRACADGGANRLYDITEGERESFLPEFINGD 71


>gi|57165366 G4 protein [Homo sapiens]
          Length = 294

 Score = 27.7 bits (60), Expect = 5.2
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 3/24 (12%)

Query: 7   PGRSES---WERGEPGRPALYFCG 27
           PGR E    W RGEPG P+ Y  G
Sbjct: 148 PGRREKLLGWLRGEPGAPSRYLGG 171


>gi|4506209 proteasome 26S ATPase subunit 2 [Homo sapiens]
          Length = 433

 Score = 27.3 bits (59), Expect = 6.8
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 31  GGREDRTLYERIVSRLRRFGTVLTEHVAAAELGARGEEAAGGDRLIHEQDLEWLQQAD 88
           G R  R L+E  ++R ++   +  + + A   GAR ++ AGGD  +    LE + Q D
Sbjct: 253 GARMVRELFE--MARTKKACLIFFDEIDAIG-GARFDDGAGGDNEVQRTMLELINQLD 307


>gi|4557741 platelet-activating factor acetylhydrolase, isoform Ib,
           alpha subunit [Homo sapiens]
          Length = 410

 Score = 26.9 bits (58), Expect = 8.9
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 7/50 (14%)

Query: 126 VLSAMIRGAADGSRFQVWDYEEGEVEALLDRYFEA------DPPGQVAAS 169
           V S M+  + D +  +VWDYE G+ E  L  + ++      D  G++ AS
Sbjct: 119 VFSVMVSASEDAT-IKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 167


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,384,666
Number of Sequences: 37866
Number of extensions: 300231
Number of successful extensions: 707
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 703
Number of HSP's gapped (non-prelim): 8
length of query: 174
length of database: 18,247,518
effective HSP length: 95
effective length of query: 79
effective length of database: 14,650,248
effective search space: 1157369592
effective search space used: 1157369592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.