Guide to the Human Genome
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Search of human proteins with 54234014

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|54234014 hydroxyacid oxidase 2 [Homo sapiens]
         (351 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|54234014 hydroxyacid oxidase 2 [Homo sapiens]                      702   0.0  
gi|7705393 hydroxyacid oxidase 2 [Homo sapiens]                       702   0.0  
gi|11068137 hydroxyacid oxidase 1 [Homo sapiens]                      336   2e-92
gi|156616279 inosine monophosphate dehydrogenase 1 isoform c [Ho...    33   0.38 
gi|34328928 inosine monophosphate dehydrogenase 1 isoform b [Hom...    33   0.38 
gi|34328930 inosine monophosphate dehydrogenase 1 isoform a [Hom...    33   0.38 
gi|217035152 inosine monophosphate dehydrogenase 1 isoform d [Ho...    33   0.38 
gi|217035150 inosine monophosphate dehydrogenase 1 isoform g [Ho...    33   0.38 
gi|217035148 inosine monophosphate dehydrogenase 1 isoform f [Ho...    33   0.38 
gi|217035146 inosine monophosphate dehydrogenase 1 isoform e [Ho...    33   0.38 
gi|45006951 dihydroorotate dehydrogenase precursor [Homo sapiens]      33   0.50 
gi|66933016 inosine monophosphate dehydrogenase 2 [Homo sapiens]       30   2.5  

>gi|54234014 hydroxyacid oxidase 2 [Homo sapiens]
          Length = 351

 Score =  702 bits (1811), Expect = 0.0
 Identities = 351/351 (100%), Positives = 351/351 (100%)

Query: 1   MSLVCLTDFQAHAREQLSKSTRDFIEGGADDSITRDDNIAAFKRIRLRPRYLRDVSEVDT 60
           MSLVCLTDFQAHAREQLSKSTRDFIEGGADDSITRDDNIAAFKRIRLRPRYLRDVSEVDT
Sbjct: 1   MSLVCLTDFQAHAREQLSKSTRDFIEGGADDSITRDDNIAAFKRIRLRPRYLRDVSEVDT 60

Query: 61  RTTIQGEEISAPICIAPTGFHCLVWPDGEMSTARAAQAAGICYITSTFASCSLEDIVIAA 120
           RTTIQGEEISAPICIAPTGFHCLVWPDGEMSTARAAQAAGICYITSTFASCSLEDIVIAA
Sbjct: 61  RTTIQGEEISAPICIAPTGFHCLVWPDGEMSTARAAQAAGICYITSTFASCSLEDIVIAA 120

Query: 121 PEGLRWFQLYVHPDLQLNKQLIQRVESLGFKALVITLDTPVCGNRRHDIRNQLRRNLTLT 180
           PEGLRWFQLYVHPDLQLNKQLIQRVESLGFKALVITLDTPVCGNRRHDIRNQLRRNLTLT
Sbjct: 121 PEGLRWFQLYVHPDLQLNKQLIQRVESLGFKALVITLDTPVCGNRRHDIRNQLRRNLTLT 180

Query: 181 DLQSPKKGNAIPYFQMTPISTSLCWNDLSWFQSITRLPIILKGILTKEDAELAVKHNVQG 240
           DLQSPKKGNAIPYFQMTPISTSLCWNDLSWFQSITRLPIILKGILTKEDAELAVKHNVQG
Sbjct: 181 DLQSPKKGNAIPYFQMTPISTSLCWNDLSWFQSITRLPIILKGILTKEDAELAVKHNVQG 240

Query: 241 IIVSNHGGRQLDEVLASIDALTEVVAAVKGKIEVYLDGGVRTGNDVLKALALGAKCIFLG 300
           IIVSNHGGRQLDEVLASIDALTEVVAAVKGKIEVYLDGGVRTGNDVLKALALGAKCIFLG
Sbjct: 241 IIVSNHGGRQLDEVLASIDALTEVVAAVKGKIEVYLDGGVRTGNDVLKALALGAKCIFLG 300

Query: 301 RPILWGLACKGEHGVKEVLNILTNEFHTSMALTGCRSVAEINRNLVQFSRL 351
           RPILWGLACKGEHGVKEVLNILTNEFHTSMALTGCRSVAEINRNLVQFSRL
Sbjct: 301 RPILWGLACKGEHGVKEVLNILTNEFHTSMALTGCRSVAEINRNLVQFSRL 351


>gi|7705393 hydroxyacid oxidase 2 [Homo sapiens]
          Length = 351

 Score =  702 bits (1811), Expect = 0.0
 Identities = 351/351 (100%), Positives = 351/351 (100%)

Query: 1   MSLVCLTDFQAHAREQLSKSTRDFIEGGADDSITRDDNIAAFKRIRLRPRYLRDVSEVDT 60
           MSLVCLTDFQAHAREQLSKSTRDFIEGGADDSITRDDNIAAFKRIRLRPRYLRDVSEVDT
Sbjct: 1   MSLVCLTDFQAHAREQLSKSTRDFIEGGADDSITRDDNIAAFKRIRLRPRYLRDVSEVDT 60

Query: 61  RTTIQGEEISAPICIAPTGFHCLVWPDGEMSTARAAQAAGICYITSTFASCSLEDIVIAA 120
           RTTIQGEEISAPICIAPTGFHCLVWPDGEMSTARAAQAAGICYITSTFASCSLEDIVIAA
Sbjct: 61  RTTIQGEEISAPICIAPTGFHCLVWPDGEMSTARAAQAAGICYITSTFASCSLEDIVIAA 120

Query: 121 PEGLRWFQLYVHPDLQLNKQLIQRVESLGFKALVITLDTPVCGNRRHDIRNQLRRNLTLT 180
           PEGLRWFQLYVHPDLQLNKQLIQRVESLGFKALVITLDTPVCGNRRHDIRNQLRRNLTLT
Sbjct: 121 PEGLRWFQLYVHPDLQLNKQLIQRVESLGFKALVITLDTPVCGNRRHDIRNQLRRNLTLT 180

Query: 181 DLQSPKKGNAIPYFQMTPISTSLCWNDLSWFQSITRLPIILKGILTKEDAELAVKHNVQG 240
           DLQSPKKGNAIPYFQMTPISTSLCWNDLSWFQSITRLPIILKGILTKEDAELAVKHNVQG
Sbjct: 181 DLQSPKKGNAIPYFQMTPISTSLCWNDLSWFQSITRLPIILKGILTKEDAELAVKHNVQG 240

Query: 241 IIVSNHGGRQLDEVLASIDALTEVVAAVKGKIEVYLDGGVRTGNDVLKALALGAKCIFLG 300
           IIVSNHGGRQLDEVLASIDALTEVVAAVKGKIEVYLDGGVRTGNDVLKALALGAKCIFLG
Sbjct: 241 IIVSNHGGRQLDEVLASIDALTEVVAAVKGKIEVYLDGGVRTGNDVLKALALGAKCIFLG 300

Query: 301 RPILWGLACKGEHGVKEVLNILTNEFHTSMALTGCRSVAEINRNLVQFSRL 351
           RPILWGLACKGEHGVKEVLNILTNEFHTSMALTGCRSVAEINRNLVQFSRL
Sbjct: 301 RPILWGLACKGEHGVKEVLNILTNEFHTSMALTGCRSVAEINRNLVQFSRL 351


>gi|11068137 hydroxyacid oxidase 1 [Homo sapiens]
          Length = 370

 Score =  336 bits (862), Expect = 2e-92
 Identities = 166/357 (46%), Positives = 241/357 (67%), Gaps = 12/357 (3%)

Query: 3   LVCLTDFQAHAREQLSKSTRDFIEGGADDSITRDDNIAAFKRIRLRPRYLRDVSEVDTRT 62
           L+C+ D++ HA+  L KS  D+   GA+D  T  DNIAAF R +L PR LR+V+E D  T
Sbjct: 5   LICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLST 64

Query: 63  TIQGEEISAPICIAPTGFHCLVWPDGEMSTARAAQAAGICYITSTFASCSLEDIVIAAPE 122
           ++ G+ +S PIC+  T    +   DGE++T RA Q+ G   + S++A+ S+E++  A PE
Sbjct: 65  SVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPE 124

Query: 123 GLRWFQLYVHPDLQLNKQLIQRVESLGFKALVITLDTPVCGNRRHDIRNQLR-------R 175
            LRW QLY++ D ++ K+L+++ E +G+KA+ +T+DTP  GNR  D+RN+ +       +
Sbjct: 125 ALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMK 184

Query: 176 NLTLTDLQ-SPKKG----NAIPYFQMTPISTSLCWNDLSWFQSITRLPIILKGILTKEDA 230
           N   + L  SP++     + +  +    I  S+ W D+ W + +T LPI+ KGIL  +DA
Sbjct: 185 NFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDA 244

Query: 231 ELAVKHNVQGIIVSNHGGRQLDEVLASIDALTEVVAAVKGKIEVYLDGGVRTGNDVLKAL 290
             AVKH + GI+VSNHG RQLD V A+ID L E+V AV+GK+EV+LDGGVR G DVLKAL
Sbjct: 245 REAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKAL 304

Query: 291 ALGAKCIFLGRPILWGLACKGEHGVKEVLNILTNEFHTSMALTGCRSVAEINRNLVQ 347
           ALGAK +F+GRPI+WGLA +GE GV++VL IL  EF  +MAL+GC++V  I++ LV+
Sbjct: 305 ALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVR 361


>gi|156616279 inosine monophosphate dehydrogenase 1 isoform c [Homo
           sapiens]
          Length = 589

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 272 IEVYLDGGVRTGNDVLKALALGAKCIFLGRPILWGLACKGEH 313
           + +  DGG++T   V+KALALGA  + +G  +       GE+
Sbjct: 434 VPIIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEY 475


>gi|34328928 inosine monophosphate dehydrogenase 1 isoform b [Homo
           sapiens]
          Length = 563

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 272 IEVYLDGGVRTGNDVLKALALGAKCIFLGRPILWGLACKGEH 313
           + +  DGG++T   V+KALALGA  + +G  +       GE+
Sbjct: 408 VPIIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEY 449


>gi|34328930 inosine monophosphate dehydrogenase 1 isoform a [Homo
           sapiens]
          Length = 599

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 272 IEVYLDGGVRTGNDVLKALALGAKCIFLGRPILWGLACKGEH 313
           + +  DGG++T   V+KALALGA  + +G  +       GE+
Sbjct: 444 VPIIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEY 485


>gi|217035152 inosine monophosphate dehydrogenase 1 isoform d [Homo
           sapiens]
          Length = 566

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 272 IEVYLDGGVRTGNDVLKALALGAKCIFLGRPILWGLACKGEH 313
           + +  DGG++T   V+KALALGA  + +G  +       GE+
Sbjct: 411 VPIIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEY 452


>gi|217035150 inosine monophosphate dehydrogenase 1 isoform g [Homo
           sapiens]
          Length = 489

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 272 IEVYLDGGVRTGNDVLKALALGAKCIFLGRPILWGLACKGEH 313
           + +  DGG++T   V+KALALGA  + +G  +       GE+
Sbjct: 334 VPIIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEY 375


>gi|217035148 inosine monophosphate dehydrogenase 1 isoform f [Homo
           sapiens]
          Length = 509

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 272 IEVYLDGGVRTGNDVLKALALGAKCIFLGRPILWGLACKGEH 313
           + +  DGG++T   V+KALALGA  + +G  +       GE+
Sbjct: 354 VPIIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEY 395


>gi|217035146 inosine monophosphate dehydrogenase 1 isoform e [Homo
           sapiens]
          Length = 514

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 272 IEVYLDGGVRTGNDVLKALALGAKCIFLGRPILWGLACKGEH 313
           + +  DGG++T   V+KALALGA  + +G  +       GE+
Sbjct: 359 VPIIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEY 400


>gi|45006951 dihydroorotate dehydrogenase precursor [Homo sapiens]
          Length = 395

 Score = 32.7 bits (73), Expect = 0.50
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 8/92 (8%)

Query: 238 VQGIIVSNHGG---RQLDEVLASIDALTEVVAAVKGKIEVYLDGGVRTGNDVLKALALGA 294
           +QG + S  GG   + L ++  S   + E+ A  +G++ +   GGV +G D L+ +  GA
Sbjct: 292 LQGALRSETGGLSGKPLRDL--STQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGA 349

Query: 295 KCIFLGRPI-LWGLACKGEHGVKEVLNILTNE 325
             + L   +  WG    G+  VK  L  L  E
Sbjct: 350 SLVQLYTALTFWGPPVVGK--VKRELEALLKE 379


>gi|66933016 inosine monophosphate dehydrogenase 2 [Homo sapiens]
          Length = 514

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 272 IEVYLDGGVRTGNDVLKALALGAKCIFLGRPILWGLACKGEH 313
           + V  DGG++    + KALALGA  + +G  +       GE+
Sbjct: 359 VPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEY 400


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,116,463
Number of Sequences: 37866
Number of extensions: 498655
Number of successful extensions: 1072
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1059
Number of HSP's gapped (non-prelim): 12
length of query: 351
length of database: 18,247,518
effective HSP length: 103
effective length of query: 248
effective length of database: 14,347,320
effective search space: 3558135360
effective search space used: 3558135360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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