Search of human proteins with 5031657

Search of human proteins with 5031657

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5031657 PDZK1 interacting protein 1 [Homo sapiens]
         (114 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5031657 PDZK1 interacting protein 1 [Homo sapiens]                 230   2e-61
gi|211059425 hypothetical protein LOC284422 [Homo sapiens]             40   5e-04
gi|5174667 sarcoma amplified sequence [Homo sapiens]                   28   1.2  
gi|194272148 epsin 1 isoform a [Homo sapiens]                          27   2.7  
gi|31559833 ES cell expressed Ras [Homo sapiens]                       27   2.7  
gi|48255947 plasma membrane calcium ATPase 1 isoform 1a [Homo sa...    27   3.5  
gi|48255945 plasma membrane calcium ATPase 1 isoform 1b [Homo sa...    27   3.5  
gi|4557369 bone morphogenetic protein 2 preproprotein [Homo sapi...    27   4.6  
gi|110347451 platelet/endothelial cell adhesion molecule [Homo s...    27   4.6  
gi|21361787 tetratricopeptide repeat domain 17 [Homo sapiens]          26   5.9  
gi|239756957 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s...    26   7.8  
gi|239751459 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s...    26   7.8  
gi|239745966 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s...    26   7.8  

>gi|5031657 PDZK1 interacting protein 1 [Homo sapiens]
          Length = 114

 Score =  230 bits (587), Expect = 2e-61
 Identities = 114/114 (100%), Positives = 114/114 (100%)

Query: 1   MSALSLLILGLLTAVPPASCQQGLGNLQPWMQGLIAVAVFLVLVAIAFAVNHFWCQEEPE 60
           MSALSLLILGLLTAVPPASCQQGLGNLQPWMQGLIAVAVFLVLVAIAFAVNHFWCQEEPE
Sbjct: 1   MSALSLLILGLLTAVPPASCQQGLGNLQPWMQGLIAVAVFLVLVAIAFAVNHFWCQEEPE 60

Query: 61  PAHMILTVGNKADGVLVGTDGRYSSMAASFRSSEHENAYENVPEEEGKVRSTPM 114
           PAHMILTVGNKADGVLVGTDGRYSSMAASFRSSEHENAYENVPEEEGKVRSTPM
Sbjct: 61  PAHMILTVGNKADGVLVGTDGRYSSMAASFRSSEHENAYENVPEEEGKVRSTPM 114


>gi|211059425 hypothetical protein LOC284422 [Homo sapiens]
          Length = 130

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 19/53 (35%), Positives = 27/53 (50%)

Query: 5  SLLILGLLTAVPPASCQQGLGNLQPWMQGLIAVAVFLVLVAIAFAVNHFWCQE 57
          +LL+L  L   P  + Q     L+PW+ GL AV  FL +V +    N  WC +
Sbjct: 6  ALLVLEFLLLSPVEAQQATEHRLKPWLVGLAAVVGFLFIVYLVLLANRLWCSK 58


>gi|5174667 sarcoma amplified sequence [Homo sapiens]
          Length = 210

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 11/54 (20%)

Query: 4  LSLLILGLLTAVPPASCQQGLGNLQPW--MQGLIAVAVFLVLVAIA---FAVNH 52
          +SLL++G+      A+  +GLG +     + G+IAV VFL+L+A+A    AVNH
Sbjct: 23 VSLLLIGV------AAWGKGLGLVSSIHIIGGVIAVGVFLLLIAVAGLVGAVNH 70


>gi|194272148 epsin 1 isoform a [Homo sapiens]
          Length = 662

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 1/83 (1%)

Query: 28  QPWMQGLIAVAVFLVLVAIAFAVNHFWCQEEPEPAHMILTVGNKADGVLVGTDGRYSSMA 87
           +PW   ++  +  L    +  A++   CQ  P+P+     +  +  G L     +  +M+
Sbjct: 55  EPWASAILGTSGLLASPVLPAALDAVTCQHLPQPSSGSRPISPRI-GALCPLLLQPGTMS 113

Query: 88  ASFRSSEHENAYENVPEEEGKVR 110
            S    + +N   N  E E KVR
Sbjct: 114 TSSLRRQMKNIVHNYSEAEIKVR 136


>gi|31559833 ES cell expressed Ras [Homo sapiens]
          Length = 233

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 50  VNHFWCQEEPEPAHMILTVGNKADGVLVGTDGRYSSMAASFRSS 93
           +   W    P PA  ++ VGNK D  LV T G   + AA+   S
Sbjct: 131 LQQIWATWGPHPAQPLVLVGNKCD--LVTTAGDAHAAAAALAHS 172


>gi|48255947 plasma membrane calcium ATPase 1 isoform 1a [Homo
           sapiens]
          Length = 1176

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 8/27 (29%), Positives = 18/27 (66%)

Query: 33  GLIAVAVFLVLVAIAFAVNHFWCQEEP 59
           GL+  A+ ++++ + F ++ FW Q+ P
Sbjct: 377 GLLMSAITVIILVLYFVIDTFWVQKRP 403


>gi|48255945 plasma membrane calcium ATPase 1 isoform 1b [Homo
           sapiens]
          Length = 1220

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 8/27 (29%), Positives = 18/27 (66%)

Query: 33  GLIAVAVFLVLVAIAFAVNHFWCQEEP 59
           GL+  A+ ++++ + F ++ FW Q+ P
Sbjct: 377 GLLMSAITVIILVLYFVIDTFWVQKRP 403


>gi|4557369 bone morphogenetic protein 2 preproprotein [Homo
           sapiens]
          Length = 396

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 82  RYSSMAASFRSSEHENAYENVPEEEGK 108
           R +S A + RS  HE + E +PE  GK
Sbjct: 101 RAASRANTVRSFHHEESLEELPETSGK 127


>gi|110347451 platelet/endothelial cell adhesion molecule [Homo
           sapiens]
          Length = 738

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 27  LQPWMQGLIAVAVFLVLVAI 46
           L PW +GLIAV +  V++A+
Sbjct: 596 LAPWKKGLIAVVIIGVIIAL 615


>gi|21361787 tetratricopeptide repeat domain 17 [Homo sapiens]
          Length = 1141

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 15   VPPASCQQGLGNLQPWMQGLIAVAVFLVLVAIAFAVNHF 53
            VP  S    L N + W   +I VA   V +A  FAVNHF
Sbjct: 1052 VPLISLANILHNAKLWNDAVI-VATMAVEIAPHFAVNHF 1089


>gi|239756957 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
            sapiens]
          Length = 4470

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 55   CQEEPEPAHMILTVGNKADGVLVGTDGRYSSMAASFRS 92
            CQ+E +  + ++ + N+  G L   + R++    +FRS
Sbjct: 3318 CQQEADATNRVILLANRLVGGLASENIRWAESVENFRS 3355


>gi|239751459 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
            sapiens]
          Length = 4485

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 55   CQEEPEPAHMILTVGNKADGVLVGTDGRYSSMAASFRS 92
            CQ+E +  + ++ + N+  G L   + R++    +FRS
Sbjct: 3296 CQQEADATNRVILLANRLVGGLASENIRWAESVENFRS 3333


>gi|239745966 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
            sapiens]
          Length = 4485

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 55   CQEEPEPAHMILTVGNKADGVLVGTDGRYSSMAASFRS 92
            CQ+E +  + ++ + N+  G L   + R++    +FRS
Sbjct: 3296 CQQEADATNRVILLANRLVGGLASENIRWAESVENFRS 3333


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,480,849
Number of Sequences: 37866
Number of extensions: 168970
Number of successful extensions: 381
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 371
Number of HSP's gapped (non-prelim): 13
length of query: 114
length of database: 18,247,518
effective HSP length: 84
effective length of query: 30
effective length of database: 15,066,774
effective search space: 452003220
effective search space used: 452003220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.