Guide to the Human Genome
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Name: PDZK1IP1 Sequence: fasta or formatted (114aa) NCBI GI: 5031657
Description:

PDZK1 interacting protein 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         13           2
 C cysteine            1.8          2           1
 D aspartate           1.8          2           1
 E glutamate           7.9          9           3
 F phenylalanine       3.5          4           1
 G glycine             7.9          9           1
 H histidine           2.6          3           1
 I isoleucine          3.5          4           1
 K lysine              1.8          2           1
 L leucine            11.4         13           2
 M methionine          4.4          5           1
 N asparagine          4.4          5           1
 P proline             6.1          7           2
 Q glutamine           4.4          5           2
 R arginine            2.6          3           1
 S serine              7.9          9           2
 T threonine           3.5          4           1
 V valine              9.6         11           1
 W tryptophan          1.8          2           1
 Y tyrosine            1.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PDZK1 interacting protein 1 
LOC284422             0.073   hypothetical protein LOC284422 
TSPAN31               0.015   sarcoma amplified sequence 
EPN1                  0.010   epsin 1 isoform a 
ERAS                  0.010   ES cell expressed Ras 
ATP2B1                0.010   plasma membrane calcium ATPase 1 isoform 1a 
ATP2B1                0.010   plasma membrane calcium ATPase 1 isoform 1b 
BMP2                  0.010   bone morphogenetic protein 2 preproprotein 
PECAM1                0.010   platelet/endothelial cell adhesion molecule 
TTC17                 0.005   tetratricopeptide repeat domain 17 
DNAH17                0.005   PREDICTED: dynein, axonemal, heavy chain 17 
DNAH17                0.005   PREDICTED: dynein, axonemal, heavy chain 17 
DNAH17                0.005   PREDICTED: dynein, axonemal, heavy chain 17 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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