Search of human proteins with 50233826

Search of human proteins with 50233826

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|50233826 transmembrane protein 26 [Homo sapiens]
         (368 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|50233826 transmembrane protein 26 [Homo sapiens]                   732   0.0  
gi|32401435 G protein-coupled receptor 141 [Homo sapiens]              31   2.0  
gi|153251865 hypothetical protein LOC84226 [Homo sapiens]              30   2.6  
gi|156105681 presenilin 2 isoform 2 [Homo sapiens]                     29   5.9  
gi|10864043 kidney and liver proline oxidase 1 [Homo sapiens]          29   5.9  
gi|124517687 zinc finger protein 560 [Homo sapiens]                    29   5.9  

>gi|50233826 transmembrane protein 26 [Homo sapiens]
          Length = 368

 Score =  732 bits (1890), Expect = 0.0
 Identities = 368/368 (100%), Positives = 368/368 (100%)

Query: 1   MEGLVFLNALATRLLFLLHSLVGVWRVTEVKKEPRYWLLALLNLLLFLETALTLKFKRGR 60
           MEGLVFLNALATRLLFLLHSLVGVWRVTEVKKEPRYWLLALLNLLLFLETALTLKFKRGR
Sbjct: 1   MEGLVFLNALATRLLFLLHSLVGVWRVTEVKKEPRYWLLALLNLLLFLETALTLKFKRGR 60

Query: 61  GYKWFSPAIFLYLISIVPSLWLLELHHETQYCSIQAEGTSQNTSRKEDFNQTLTSNEQTS 120
           GYKWFSPAIFLYLISIVPSLWLLELHHETQYCSIQAEGTSQNTSRKEDFNQTLTSNEQTS
Sbjct: 61  GYKWFSPAIFLYLISIVPSLWLLELHHETQYCSIQAEGTSQNTSRKEDFNQTLTSNEQTS 120

Query: 121 RADDLIETAKVFVNNLSTVCEKVWTLGLHQTFLLMLIIGRWLLPIGGGITRDQLSQLLLM 180
           RADDLIETAKVFVNNLSTVCEKVWTLGLHQTFLLMLIIGRWLLPIGGGITRDQLSQLLLM
Sbjct: 121 RADDLIETAKVFVNNLSTVCEKVWTLGLHQTFLLMLIIGRWLLPIGGGITRDQLSQLLLM 180

Query: 181 FVGTAADILEFTSETLEEQNVRNSPALVYAILVIWTWSMLQFPLDLAVQNVVCPVSVTER 240
           FVGTAADILEFTSETLEEQNVRNSPALVYAILVIWTWSMLQFPLDLAVQNVVCPVSVTER
Sbjct: 181 FVGTAADILEFTSETLEEQNVRNSPALVYAILVIWTWSMLQFPLDLAVQNVVCPVSVTER 240

Query: 241 GFPSLFFCQYSADLWNIGISVFIQDGPFLVVRLILMTYFKVINQMLVFFAAKNFLVVVLQ 300
           GFPSLFFCQYSADLWNIGISVFIQDGPFLVVRLILMTYFKVINQMLVFFAAKNFLVVVLQ
Sbjct: 241 GFPSLFFCQYSADLWNIGISVFIQDGPFLVVRLILMTYFKVINQMLVFFAAKNFLVVVLQ 300

Query: 301 LYRLVVLALAVRASLRSQSEGLKGEHGCRAQTSESGPSQRDWQNESKEGLAIPLRGSPVT 360
           LYRLVVLALAVRASLRSQSEGLKGEHGCRAQTSESGPSQRDWQNESKEGLAIPLRGSPVT
Sbjct: 301 LYRLVVLALAVRASLRSQSEGLKGEHGCRAQTSESGPSQRDWQNESKEGLAIPLRGSPVT 360

Query: 361 SDDSHHTP 368
           SDDSHHTP
Sbjct: 361 SDDSHHTP 368


>gi|32401435 G protein-coupled receptor 141 [Homo sapiens]
          Length = 305

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 277 TYFKVINQMLVFFA-AKNFLVVVLQLYRLVVLALAVRASLRSQSE 320
           TY K+IN M+V F  A   +++V Q++ ++++   +R SL S  E
Sbjct: 176 TYVKIINYMIVIFVIAVAVILLVFQVFIIMLMVQKLRHSLLSHQE 220


>gi|153251865 hypothetical protein LOC84226 [Homo sapiens]
          Length = 1984

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 314  SLRSQSEGLKGEHGCRAQTSESGPSQRDWQNESKEGLAIPLRGSPVT-SDDSHHTP 368
            S RS     +  H   +Q S  GPS+R   + SK     P R S  + S+ SHH+P
Sbjct: 1682 SERSHCSPSERRHRSPSQRSHRGPSERRHHSPSKRSHRSPARRSHRSPSERSHHSP 1737


>gi|156105681 presenilin 2 isoform 2 [Homo sapiens]
          Length = 447

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 18/117 (15%)

Query: 146 LGLHQTFLLM------LIIGRWLLPIGGGITRDQLSQLLLMFVGTAADILEFTSETLEEQ 199
           L L Q +L+M      L+  ++L      +    +S   L+ V      L    ET +E+
Sbjct: 225 LVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQER 284

Query: 200 NVRNSPALVYAILVIWTWSM----------LQFPLDLAVQNVVCPVSVTERGFPSLF 246
           N    PAL+Y+  ++WT  M          LQ P D  +++     S  E  +P +F
Sbjct: 285 NEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYDPEMEDSY--DSFGEPSYPEVF 339


>gi|10864043 kidney and liver proline oxidase 1 [Homo sapiens]
          Length = 536

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 319 SEGLKGEHGCRAQTSESGPSQRDWQNESKEGLAIPLRGS 357
           S+G +    C    S++GP  R WQ+ S +G A  L+G+
Sbjct: 72  SQGPRMLRTCYVLCSQAGPPSRGWQSLSFDGGAFHLKGT 110


>gi|124517687 zinc finger protein 560 [Homo sapiens]
          Length = 790

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 16/63 (25%), Positives = 31/63 (49%)

Query: 292 KNFLVVVLQLYRLVVLALAVRASLRSQSEGLKGEHGCRAQTSESGPSQRDWQNESKEGLA 351
           +N   V  QL++  V++      LR+  +G+  +   + QTS S   Q  W+ ++  G+ 
Sbjct: 47  ENVAKVGFQLFKPSVISWLEEEELRTLQQGVLQDWAIKHQTSVSALQQEFWKIQTSNGIQ 106

Query: 352 IPL 354
           + L
Sbjct: 107 MDL 109


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,521,124
Number of Sequences: 37866
Number of extensions: 482894
Number of successful extensions: 1540
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1533
Number of HSP's gapped (non-prelim): 10
length of query: 368
length of database: 18,247,518
effective HSP length: 104
effective length of query: 264
effective length of database: 14,309,454
effective search space: 3777695856
effective search space used: 3777695856
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.