Search of human proteins with 133505169

Search of human proteins with 133505169

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|133505169 macrophage expressed gene 1 [Homo sapiens]
         (716 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|133505169 macrophage expressed gene 1 [Homo sapiens]              1451   0.0  
gi|54112401 calmodulin-binding transcription activator 1 [Homo s...    31   4.6  
gi|21493022 A kinase (PRKA) anchor protein 12 isoform 1 [Homo sa...    30   6.0  
gi|21493024 A kinase (PRKA) anchor protein 12 isoform 2 [Homo sa...    30   6.0  
gi|112790163 metal-regulatory transcription factor 1 [Homo sapiens]    30   6.0  
gi|122937434 Rho-guanine nucleotide exchange factor [Homo sapiens]     30   7.8  
gi|44888831 apolipoprotein B [Homo sapiens]                            30   7.8  
gi|21735592 programmed cell death 2 isoform 1 [Homo sapiens]           30   7.8  

>gi|133505169 macrophage expressed gene 1 [Homo sapiens]
          Length = 716

 Score = 1451 bits (3757), Expect = 0.0
 Identities = 716/716 (100%), Positives = 716/716 (100%)

Query: 1   MNNFRATILFWAAAAWAKSGKPSGEMDEVGVQKCKNALKLPVLEVLPGGGWDNLRNVDMG 60
           MNNFRATILFWAAAAWAKSGKPSGEMDEVGVQKCKNALKLPVLEVLPGGGWDNLRNVDMG
Sbjct: 1   MNNFRATILFWAAAAWAKSGKPSGEMDEVGVQKCKNALKLPVLEVLPGGGWDNLRNVDMG 60

Query: 61  RVMELTYSNCRTTEDGQYIIPDEIFTIPQKQSNLEMNSEILESWANYQSSTSYSINTELS 120
           RVMELTYSNCRTTEDGQYIIPDEIFTIPQKQSNLEMNSEILESWANYQSSTSYSINTELS
Sbjct: 61  RVMELTYSNCRTTEDGQYIIPDEIFTIPQKQSNLEMNSEILESWANYQSSTSYSINTELS 120

Query: 121 LFSKVNGKFSTEFQRMKTLQVKDQAITTRVQVRNLVYTVKINPTLELSSGFRKELLDISD 180
           LFSKVNGKFSTEFQRMKTLQVKDQAITTRVQVRNLVYTVKINPTLELSSGFRKELLDISD
Sbjct: 121 LFSKVNGKFSTEFQRMKTLQVKDQAITTRVQVRNLVYTVKINPTLELSSGFRKELLDISD 180

Query: 181 RLENNQTRMATYLAELLVLNYGTHVTTSVDAGAALIQEDHLRASFLQDSQSSRSAVTASA 240
           RLENNQTRMATYLAELLVLNYGTHVTTSVDAGAALIQEDHLRASFLQDSQSSRSAVTASA
Sbjct: 181 RLENNQTRMATYLAELLVLNYGTHVTTSVDAGAALIQEDHLRASFLQDSQSSRSAVTASA 240

Query: 241 GLAFQNTVNFKFEENYTSQNVLTKSYLSNRTNSRVQSIGGVPFYPGITLQAWQQGITNHL 300
           GLAFQNTVNFKFEENYTSQNVLTKSYLSNRTNSRVQSIGGVPFYPGITLQAWQQGITNHL
Sbjct: 241 GLAFQNTVNFKFEENYTSQNVLTKSYLSNRTNSRVQSIGGVPFYPGITLQAWQQGITNHL 300

Query: 301 VAIDRSGLPLHFFINPNMLPDLPGPLVKKVSKTVETAVKRYYTFNTYPGCTDLNSPNFNF 360
           VAIDRSGLPLHFFINPNMLPDLPGPLVKKVSKTVETAVKRYYTFNTYPGCTDLNSPNFNF
Sbjct: 301 VAIDRSGLPLHFFINPNMLPDLPGPLVKKVSKTVETAVKRYYTFNTYPGCTDLNSPNFNF 360

Query: 361 QANTDDGSCEGKMTNFSFGGVYQECTQLSGNRDVLLCQKLEQKNPLTGDFSCPSGYSPVH 420
           QANTDDGSCEGKMTNFSFGGVYQECTQLSGNRDVLLCQKLEQKNPLTGDFSCPSGYSPVH
Sbjct: 361 QANTDDGSCEGKMTNFSFGGVYQECTQLSGNRDVLLCQKLEQKNPLTGDFSCPSGYSPVH 420

Query: 421 LLSQIHEEGYNHLECHRKCTLLVFCKTVCEDVFQVAKAEFRAFWCVASSQVPENSGLLFG 480
           LLSQIHEEGYNHLECHRKCTLLVFCKTVCEDVFQVAKAEFRAFWCVASSQVPENSGLLFG
Sbjct: 421 LLSQIHEEGYNHLECHRKCTLLVFCKTVCEDVFQVAKAEFRAFWCVASSQVPENSGLLFG 480

Query: 481 GLFSSKSINPMTNAQSCPAGYFPLRLFENLKVCVSQDYELGSRFAVPFGGFFSCTVGNPL 540
           GLFSSKSINPMTNAQSCPAGYFPLRLFENLKVCVSQDYELGSRFAVPFGGFFSCTVGNPL
Sbjct: 481 GLFSSKSINPMTNAQSCPAGYFPLRLFENLKVCVSQDYELGSRFAVPFGGFFSCTVGNPL 540

Query: 541 VDPAISRDLGAPSLKKCPGGFSQHPALISDGCQVSYCVKSGLFTGGSLPPARLPPFTRPP 600
           VDPAISRDLGAPSLKKCPGGFSQHPALISDGCQVSYCVKSGLFTGGSLPPARLPPFTRPP
Sbjct: 541 VDPAISRDLGAPSLKKCPGGFSQHPALISDGCQVSYCVKSGLFTGGSLPPARLPPFTRPP 600

Query: 601 LMSQAATNTVIVTNSENARSWIKDSQTHQWRLGEPIELRRAMNVIHGDGGGLSGGAAAGV 660
           LMSQAATNTVIVTNSENARSWIKDSQTHQWRLGEPIELRRAMNVIHGDGGGLSGGAAAGV
Sbjct: 601 LMSQAATNTVIVTNSENARSWIKDSQTHQWRLGEPIELRRAMNVIHGDGGGLSGGAAAGV 660

Query: 661 TVGVTTILAVVITLAIYGTRKFKKKAYQAIEERQSLVPGTAATGDTTYQEQGQSPA 716
           TVGVTTILAVVITLAIYGTRKFKKKAYQAIEERQSLVPGTAATGDTTYQEQGQSPA
Sbjct: 661 TVGVTTILAVVITLAIYGTRKFKKKAYQAIEERQSLVPGTAATGDTTYQEQGQSPA 716


>gi|54112401 calmodulin-binding transcription activator 1 [Homo
           sapiens]
          Length = 1673

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 13/91 (14%)

Query: 204 HVTTSVDAGAALIQEDHLRASFLQDSQSSRSAVTASAGLAFQNTVNFKFEENYTSQNVL- 262
           HV T +++ ++L          L   Q++  A+TA   +  + +   +  E       L 
Sbjct: 661 HVETRIESTSSL---------HLMQFQANFQAMTAEGEVTMETSQAAEGSEVLLKSGELQ 711

Query: 263 ---TKSYLSNRTNSRVQSIGGVPFYPGITLQ 290
              ++ YL   TN  ++S GGVP  PG  +Q
Sbjct: 712 ACSSEHYLQPETNGVIRSAGGVPILPGNVVQ 742


>gi|21493022 A kinase (PRKA) anchor protein 12 isoform 1 [Homo
           sapiens]
          Length = 1782

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 73  TEDGQYIIPDEIFTIPQKQSNLEMNSEILESWAN 106
           T+DGQ   P+ I  IP  +SNLE  ++  ES AN
Sbjct: 135 TDDGQEETPEIIEQIPSSESNLEELTQPTESQAN 168


>gi|21493024 A kinase (PRKA) anchor protein 12 isoform 2 [Homo
           sapiens]
          Length = 1684

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 73  TEDGQYIIPDEIFTIPQKQSNLEMNSEILESWAN 106
           T+DGQ   P+ I  IP  +SNLE  ++  ES AN
Sbjct: 37  TDDGQEETPEIIEQIPSSESNLEELTQPTESQAN 70


>gi|112790163 metal-regulatory transcription factor 1 [Homo sapiens]
          Length = 753

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 12/79 (15%)

Query: 278 IGGVPFYPGITLQAWQQGITNHLVAIDRSGLPLHFFINPNMLP---DLPGPLVKKVSKTV 334
           +GG   +  I  +A  QG   H+++ D+    +H  INP   P   ++ G  +   S+  
Sbjct: 75  VGGEEGFHLIDHEAMSQGYVQHIISPDQ----IHLTINPGSTPMPRNIEGATLTLQSECP 130

Query: 335 ET---AVKRYYTFNTYPGC 350
           ET    VKRY    T+ GC
Sbjct: 131 ETKRKEVKRYQC--TFEGC 147


>gi|122937434 Rho-guanine nucleotide exchange factor [Homo sapiens]
          Length = 1651

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 383  QECTQLSGNRDVLLCQKLEQKNPLTGDFSCPSGYSPVHL 421
            Q+C ++  N+D  +C  LE+K  +  +    SG+  VHL
Sbjct: 1216 QQCQEILTNQDQQICAYLEEKLHIYAELGELSGFEDVHL 1254


>gi|44888831 apolipoprotein B [Homo sapiens]
          Length = 367

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 12/85 (14%)

Query: 255 NYTSQNVLTKSYLSNRTNS-RVQSIGGV-PFYPGITLQAWQQGITNHLVAID----RSGL 308
           ++  Q +LT   L++R N+  + +I GV P++  + LQ  +   T    A++     +  
Sbjct: 208 SHVFQPILTGRALADRHNAYEINAITGVKPYFTDVLLQTKRNPNTKAQEALESYPLNNAF 267

Query: 309 PLHFF------INPNMLPDLPGPLV 327
           P  FF      + PN+ PDL  P+V
Sbjct: 268 PGQFFQMPSGQLQPNLPPDLRAPVV 292


>gi|21735592 programmed cell death 2 isoform 1 [Homo sapiens]
          Length = 344

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 70  CRTTEDGQYIIPDEIFTIPQKQSNLEMNSEIL------ESWANYQSSTSYSINTELSLFS 123
           C   +   +IIPD  F  P+ +  +E   EI+      E ++    S   ++  EL   +
Sbjct: 172 CAQPDHLDHIIPDHNFLFPEFEIVIETEDEIMPEVVEKEDYSEIIGSMGEALEEELDSMA 231

Query: 124 KVNGKFSTEFQRMKT 138
           K   +    FQ+ KT
Sbjct: 232 KHESREDKIFQKFKT 246


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,523,900
Number of Sequences: 37866
Number of extensions: 1276460
Number of successful extensions: 3309
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3301
Number of HSP's gapped (non-prelim): 8
length of query: 716
length of database: 18,247,518
effective HSP length: 109
effective length of query: 607
effective length of database: 14,120,124
effective search space: 8570915268
effective search space used: 8570915268
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.