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Search of human proteins with 4826659
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4826659 F-actin capping protein beta subunit [Homo sapiens]
(272 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4826659 F-actin capping protein beta subunit [Homo sapiens] 551 e-157
gi|239753255 PREDICTED: similar to hCG1793552 [Homo sapiens] 121 7e-28
gi|239747832 PREDICTED: similar to F-actin capping protein beta ... 121 7e-28
gi|239741698 PREDICTED: similar to hCG1793552 [Homo sapiens] 121 7e-28
gi|145275216 kinesin family member 2B [Homo sapiens] 32 0.77
gi|149944715 protein phosphatase 1H (PP2C domain containing) [Ho... 29 3.8
gi|224493895 t-complex 11 (mouse) like 1 [Homo sapiens] 29 5.0
gi|224493847 t-complex 11 (mouse) like 1 [Homo sapiens] 29 5.0
gi|239749338 PREDICTED: hypothetical protein XP_002346998 [Homo ... 29 5.0
gi|150010558 myosin, heavy polypeptide 15 [Homo sapiens] 29 5.0
>gi|4826659 F-actin capping protein beta subunit [Homo sapiens]
Length = 272
Score = 551 bits (1420), Expect = e-157
Identities = 272/272 (100%), Positives = 272/272 (100%)
Query: 1 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 60
MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL
Sbjct: 1 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 60
Query: 61 LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 120
LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY
Sbjct: 61 LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY 120
Query: 121 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 180
LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN
Sbjct: 121 LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN 180
Query: 181 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 240
KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV
Sbjct: 181 KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV 240
Query: 241 NGLRSVQTFADKSKQEALKNDLVEALKRKQQC 272
NGLRSVQTFADKSKQEALKNDLVEALKRKQQC
Sbjct: 241 NGLRSVQTFADKSKQEALKNDLVEALKRKQQC 272
>gi|239753255 PREDICTED: similar to hCG1793552 [Homo sapiens]
Length = 95
Score = 121 bits (303), Expect = 7e-28
Identities = 60/73 (82%), Positives = 64/73 (87%)
Query: 1 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 60
MSDQQLD ALDLMR LPPQQIEK LS+LIDL+P LCEDLL SV+Q +KIARDK VGKDYL
Sbjct: 19 MSDQQLDYALDLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPSVNQIMKIARDKEVGKDYL 78
Query: 61 LCDYNRDGDSYRS 73
LCD NRDGD YRS
Sbjct: 79 LCDCNRDGDCYRS 91
>gi|239747832 PREDICTED: similar to F-actin capping protein beta
subunit [Homo sapiens]
Length = 95
Score = 121 bits (303), Expect = 7e-28
Identities = 60/73 (82%), Positives = 64/73 (87%)
Query: 1 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 60
MSDQQLD ALDLMR LPPQQIEK LS+LIDL+P LCEDLL SV+Q +KIARDK VGKDYL
Sbjct: 19 MSDQQLDYALDLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPSVNQIMKIARDKEVGKDYL 78
Query: 61 LCDYNRDGDSYRS 73
LCD NRDGD YRS
Sbjct: 79 LCDCNRDGDCYRS 91
>gi|239741698 PREDICTED: similar to hCG1793552 [Homo sapiens]
Length = 95
Score = 121 bits (303), Expect = 7e-28
Identities = 60/73 (82%), Positives = 64/73 (87%)
Query: 1 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 60
MSDQQLD ALDLMR LPPQQIEK LS+LIDL+P LCEDLL SV+Q +KIARDK VGKDYL
Sbjct: 19 MSDQQLDYALDLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPSVNQIMKIARDKEVGKDYL 78
Query: 61 LCDYNRDGDSYRS 73
LCD NRDGD YRS
Sbjct: 79 LCDCNRDGDCYRS 91
>gi|145275216 kinesin family member 2B [Homo sapiens]
Length = 673
Score = 31.6 bits (70), Expect = 0.77
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 22/103 (21%)
Query: 181 KSGSG-TMNLGGSLTRQMEKDETVSDCSPHIANI----------GRLVEDMENKIRSTLN 229
++GSG T +GG + T DCS I + E ++ K+ T
Sbjct: 304 QTGSGKTYTMGGDFSG------TAQDCSKGIYALVAQDVFLLLRNSTYEKLDLKVYGTFF 357
Query: 230 EIYFGKTKDIVNGLRSVQTFADKSKQEALKNDLVEALKRKQQC 272
EIY GK D++N + +Q D ++Q V L+ K+ C
Sbjct: 358 EIYGGKVYDLLNWKKKLQVLEDGNQQIQ-----VVGLQEKEVC 395
>gi|149944715 protein phosphatase 1H (PP2C domain containing) [Homo
sapiens]
Length = 514
Score = 29.3 bits (64), Expect = 3.8
Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 28/156 (17%)
Query: 18 PQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSN 77
P+ + L L + P L + + ++ P ++ R K +GK L D+N G +Y++
Sbjct: 308 PETERQRLQYLAFMQPHLLGNEFTHLEFPRRVQR-KELGKKMLYRDFNMTGWAYKTIEDE 366
Query: 78 KYDPPLEDGAMPSARL------------RKLEVEANNAFDQYRDLYFEGGVSSVYLWDL- 124
PL G AR+ L+V +N + + F V ++DL
Sbjct: 367 DLKFPLIYGEGKKARVMATIGVTRGLGDHDLKVHDSNIYIK----PFLSSAPEVRIYDLS 422
Query: 125 --DHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQE 158
DHG V+++ G WD + EV E
Sbjct: 423 KYDHGSDDVLIL--------ATDGLWDVLSNEEVAE 450
>gi|224493895 t-complex 11 (mouse) like 1 [Homo sapiens]
Length = 509
Score = 28.9 bits (63), Expect = 5.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 221 ENKIRSTLNEIYFGKTKDIVNGLRSVQTFADKSKQEALKND 261
EN +S +NE K+ D GL AD++ Q+A+K+D
Sbjct: 3 ENLDKSNVNEAGKSKSNDSEEGLEDAVEGADEALQKAIKSD 43
>gi|224493847 t-complex 11 (mouse) like 1 [Homo sapiens]
Length = 509
Score = 28.9 bits (63), Expect = 5.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 221 ENKIRSTLNEIYFGKTKDIVNGLRSVQTFADKSKQEALKND 261
EN +S +NE K+ D GL AD++ Q+A+K+D
Sbjct: 3 ENLDKSNVNEAGKSKSNDSEEGLEDAVEGADEALQKAIKSD 43
>gi|239749338 PREDICTED: hypothetical protein XP_002346998 [Homo
sapiens]
Length = 230
Score = 28.9 bits (63), Expect = 5.0
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 159 KSSGRTA-HYKLTSTVMLWLQTNKSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLV 217
+++GR A H + + L+ N + + G LT +E + ++ PH+ N GRL
Sbjct: 53 ENNGRLAPHLENKGRLTPHLENNGRLTPHLENKGRLTPDLENNGCLT---PHLENNGRLT 109
Query: 218 EDMENKIRST 227
D+EN R T
Sbjct: 110 PDLENNGRLT 119
>gi|150010558 myosin, heavy polypeptide 15 [Homo sapiens]
Length = 1946
Score = 28.9 bits (63), Expect = 5.0
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 22/98 (22%)
Query: 179 TNKSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNE----IYFG 234
TN+ GT NL +MEK + +L+E+ + +++ TL E +
Sbjct: 1525 TNQVREGTKNL-----TEMEK-------------VKKLIEEEKTEVQVTLEETEGALERN 1566
Query: 235 KTKDIVNGLRSVQTFADKSKQEALKNDLVEALKRKQQC 272
++K + L ++ A+ ++ + K++ +E +RKQQC
Sbjct: 1567 ESKILHFQLELLEAKAELERKLSEKDEEIENFRRKQQC 1604
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,014,608
Number of Sequences: 37866
Number of extensions: 429627
Number of successful extensions: 1111
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1091
Number of HSP's gapped (non-prelim): 20
length of query: 272
length of database: 18,247,518
effective HSP length: 101
effective length of query: 171
effective length of database: 14,423,052
effective search space: 2466341892
effective search space used: 2466341892
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.